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Programs for representing the surface of a channel inside protein: Difference between revisions
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Programs for representing the surface of a channel inside protein (edit)
Revision as of 06:07, 29 August 2008
, 29 August 2008no edit summary
(New page: The following programs can be used for representing the surface of a channel inside protein. 1. PASS. 2. Pymol with Caver scripts. http://www.pymol.org and http://loschmidt.chemi.muni.cz...) |
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The following programs can be used for representing the surface of a channel inside protein. | The following programs can be used for representing the surface of a channel inside protein. | ||
1. PASS. | 1. PASS. | ||
2. Pymol with Caver scripts. http://www.pymol.org and http://loschmidt.chemi.muni.cz/caver/download.php | 2. Pymol with Caver scripts. http://www.pymol.org and http://loschmidt.chemi.muni.cz/caver/download.php | ||
3. HOLE. http://d2o.biop.ox.ac.uk:38080/ | 3. HOLE. http://d2o.biop.ox.ac.uk:38080/ | ||
4. CASTp. http://sts-fw.bioengr.uic.edu/castp/ or http://www.cgl.ucsf.ed/chimera | 4. CASTp. http://sts-fw.bioengr.uic.edu/castp/ or http://www.cgl.ucsf.ed/chimera | ||
5. MOLE. http://troll.chemi.muni.cz/whitezone/development/mole/online/moleonline1.3/ or http://mole.chemi.muni.cz/download.php. | 5. MOLE. http://troll.chemi.muni.cz/whitezone/development/mole/online/moleonline1.3/ or http://mole.chemi.muni.cz/download.php. | ||
6. HOLLOW. http://hollow.sourceforge.net/. | 6. HOLLOW. http://hollow.sourceforge.net/. | ||
7. The program O can this with following protocol | 7. The program O can this with following protocol | ||
1/ make object of solvents in the tunnel, sel_off, sel_prop, sel_vis, sphere centred on tunnel... | 1/ make object of solvents in the tunnel, sel_off, sel_prop, sel_vis, sphere centred on tunnel... | ||