Servers for structure analysis: Difference between revisions

Servers for structure analysis (edit)

412 bytes added , 29 May 2008

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+== Analysis ==
-== Analyis ==
 * [http://molprobity.biochem.duke.edu/ Molprobity]
+* [http://scop.mrc-lmb.cam.ac.uk/scop/ SCOP] - Structural Classification of Proteins
+=== disulfides ===
-== Docking ==
+* [http://caps.ncbs.res.in/dsdbase//dsdbase.html DSDBASE] - Database of disulfides in proteins
+* [http://www.ehscenter.org/dbd disulfide by design] - easy to install and to run. You put in a PDB file and the program will look in the structure where disulphide bonds are possible. It also ranks the candidates in energies. Finally, it can generate a PDB file with a particular disulphide.
-* [http://nrc.bu.edu/cluster/ ClusPro] - easy to use web interface
+* [http://eagle.mmid.med.ualberta.ca/forms/ssbond.html SSBOND] - Bart Hazes' server; sourcecode available
-* [http://www.rosettacommons.org/ Rosetta] can do much more than just docking, but is difficult to use