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Phenix: Difference between revisions
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phenix.pdb_atom_selection
(phenix.pdb_atom_selection) |
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=== [http://www.phenix-online.org/documentation/hydrogens.htm phenix.reduce] - tool for adding hydrogens to a PDB model === | === [http://www.phenix-online.org/documentation/hydrogens.htm phenix.reduce] - tool for adding hydrogens to a PDB model === | ||
=== phenix.pdb_atom_selection === | |||
phenix.pdb_atom_selection model.pdb "within(3, chain L and resseq 9 and name CA)" --write-pdb-file=cut.pdb | |||
In this example, selects all atoms within 3 A from CA atom in chain A of residue number 9, and writes them into cut.pdb file. | |||
=== [http://www.phenix-online.org/documentation/superpose_pdbs.htm phenix.superpose_pdbs] - Superposition of models === | === [http://www.phenix-online.org/documentation/superpose_pdbs.htm phenix.superpose_pdbs] - Superposition of models === | ||
=== phenix.superpose_ligands - Superposition of ligands === | === phenix.superpose_ligands - Superposition of ligands === | ||