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Phenix: Difference between revisions
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→phenix.phaser - SAD phasing with Phaser
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=== [http://www.phenix-online.org/documentation/phaser_ep.htm phenix.phaser] - SAD phasing with Phaser === | === [http://www.phenix-online.org/documentation/phaser_ep.htm phenix.phaser] - SAD phasing with Phaser === | ||
[http://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software Phaser] can do SAD phasing - it is therefore called phaser_ep (ep stands for "experimental phasing"). The | [http://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software Phaser] can do SAD phasing - it is therefore called phaser_ep (ep stands for "experimental phasing"). The Phenix documentation is at [http://www.phenix-online.org/documentation/phaser_ep.htm]. The keywords are concisely (but somewhat lightly) documented at [http://www.phaser.cimr.cam.ac.uk/index.php/Keywords]. A script documenting the following features | ||
# using a PDB file (with origin-centered coordinates) as a heavy atom cluster template | # using a PDB file (with origin-centered coordinates) as a heavy atom cluster template | ||
# using two different substructure atomtypes (the cluster, and Fe) | # using two different substructure atomtypes (the cluster, and Fe) | ||