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→Installation from source, and of Rosetta interface
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== Installation from source, and of Rosetta interface == | == Installation from source, and of Rosetta interface == | ||
Phenix can be installed from a ''binary'' installer. Despite this designation it has | Phenix can be installed from a ''binary'' installer. Despite this designation, it has the source files for re-compilation. However, re-compilation is normally not required, and requires to specify the --source option to the ./install command. | ||
[http://www.phenix-online.org/documentation/reference/rosetta_refine.html phenix.rosetta_refine] (and [http://www.phenix-online.org/documentation/reference/mr_rosetta.html phenix.mr_rosetta]) requires a working Rosetta installation. The easiest way is to download one of the weekly binary+source Rosetta bundles (to be found following this [https://www.rosettacommons.org/software/license-and-download link]). | [http://www.phenix-online.org/documentation/reference/rosetta_refine.html phenix.rosetta_refine] (and [http://www.phenix-online.org/documentation/reference/mr_rosetta.html phenix.mr_rosetta]) requires a working Rosetta installation. The easiest way is to download one of the weekly binary+source Rosetta bundles (to be found following this [https://www.rosettacommons.org/software/license-and-download link]). The tar-file only has to be unpacked; binaries and libraries are pre-compiled. Your .bashrc has to be modified to have e.g. | ||
export PHENIX_ROSETTA_PATH=/usr/local/src/rosetta_bin_linux_2015.09.57646_bundle | export PHENIX_ROSETTA_PATH=/usr/local/src/rosetta_bin_linux_2015.09.57646_bundle | ||
export ROSETTA3_DB=$PHENIX_ROSETTA_PATH/main/database | export ROSETTA3_DB=$PHENIX_ROSETTA_PATH/main/database | ||
(or similarly for .cshrc) and | (or similarly for .cshrc) and | ||
rosetta.build_phenix_interface | rosetta.build_phenix_interface | ||
needs to be run. | needs to be run. (For MR_rosetta, installation is described at [http://www.phenix-online.org/documentation/reference/mr_rosetta.html#id17].) | ||
If this fails (for example, compiler error messages), then one must re-compile Phenix and/or Rosetta. Try to re-compile only Phenix first (and after that, try rosetta.build_phenix_interface again); Rosetta re-compilation may take hours. There are several issues associated with re-compilation: | |||
If this fails (for example, compiler error messages), then one must re-compile Phenix and/or Rosetta. Try to re-compile only Phenix first; Rosetta re-compilation may take hours. There are several issues associated with | |||
* if the Phenix binary installer is not used: the Phenix source installer requires (on Fedora and RHEL) the openssl-devel and libXt-devel to be installed on the system | * if the Phenix binary installer is not used: the Phenix source installer requires (on Fedora and RHEL) the openssl-devel and libXt-devel to be installed on the system | ||
* to re-compile Rosetta: go to the main/source directory and issue: | * to re-compile Rosetta: go to the main/source directory and issue: | ||
./scons.py -j8 mode=release bin | ./scons.py -j8 mode=release bin | ||
if your machine has 8 or more cores. I was able to re-compile Rosetta on CentOS7 whereas re-compilation stopped with an error on Ubuntu 12.04 LTS. | (The -j8 should be used if your machine has 8 or more cores.) I was able to re-compile Rosetta on CentOS7 whereas re-compilation stopped with an error on Ubuntu 12.04.5 LTS. | ||
== See also == | == See also == | ||