1,332
edits
Phenix: Difference between revisions
Jump to navigation
Jump to search
→TLS
(→TLS) |
|||
| Line 416: | Line 416: | ||
* run your model through TLSMD server to identify TLS domains (it will produce PHENIX friendly TLS groups selections); | * run your model through TLSMD server to identify TLS domains (it will produce PHENIX friendly TLS groups selections); | ||
http://skuld.bmsc.washington.edu/~tlsmd/ | http://skuld.bmsc.washington.edu/~tlsmd/ | ||
* or use <code>phenix.find_tls_groups</code> to find TLS groups, and to generate a tls_selections.def file. | |||
* use these selections for TLS refinement in PHENIX: see http://www.phenix-online.org/documentation/reference/refinement.html | * use these selections for TLS refinement in PHENIX: see http://www.phenix-online.org/documentation/reference/refinement.html | ||
| Line 431: | Line 432: | ||
Alternatively, phenix.refine can identify TLS groups on-the-fly, using <pre>tls.find_automatically=True</pre> | Alternatively, phenix.refine can identify TLS groups on-the-fly, using <pre>tls.find_automatically=True</pre> | ||
At lower resolution than 1.5A if you run two consecutive refinements, first with TLS | At lower resolution than 1.5A if you run two consecutive refinements, first with TLS | ||