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* XDS [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds homepage] and [http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDS XDSwiki] | * XDS [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds homepage] and [http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDS XDSwiki] | ||
* HKL [http://www.hkl-xray.com homepage] | * HKL [http://www.hkl-xray.com homepage] | ||
* [[COOT]] | |||
* ... | * ... | ||
Revision as of 21:08, 9 February 2008
All existing articles and links are blue, whereas a red link corresponds to an article that does not yet exist - by clicking on the red link you start creating that article!
Expression and Purification
- Expression systems
- Tags
- Purification
- Cleavage: wanted and unwanted
- DNA and DNA-binding proteins
- Expression and Purification: Tips and Tricks
Crystals
Crystal growth and manipulation
- Crystallization screens and methods
- Robots for crystallization setup
- Visualization of crystal growth
- Robots for crystal mounting
- Crystal growth: Tips and Tricks
Data collection
- Synchrotron beamlines
- Cryo
- Strategies
- Data quality
- Radiation damage
- Data collection: Tips and Tricks
Crystallography
Theory
Programs
by package
(large packages first)
- CCP4
- CNS
- PHENIX
- SHELX C/D/E/L (homepage at [1])
- moleman, lsqman, ... from Uppsala Software Factory
- XDS homepage and XDSwiki
- HKL homepage
- COOT
- ...
by task
- Data reduction
- Molecular replacement (MR)
- Experimental phasing (SIR/MIR and SAD/MAD)
- Model building and validation
- Refinement
- Solving a structure: Tips and Tricks
- Model building and refinement: Tricks and Tips
Bioinformatics
- Servers and programs for sequence analysis (e.g. alignment)
- Servers and programs for protein structure analysis
- Servers for ligand topologies/parameters
- Prediction of structure from sequence: servers and programs
- Programs for visualization
- Links to Bioinformatics websites