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Phenix: Difference between revisions
→An experimental feature currently being worked on
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If there is a significant amount of model missing you can try the undocumented option "use_statistical_model_for_missing_atoms=true" - you need the latest version for this. For some details see pages #17-19 in http://cci.lbl.gov/~afonine/afonine.pdf | If there is a significant amount of model missing you can try the undocumented option "use_statistical_model_for_missing_atoms=true" - you need the latest version for this. For some details see pages #17-19 in http://cci.lbl.gov/~afonine/afonine.pdf | ||
=== finding out the memory consumption === | |||
adding | |||
--show-process-info | |||
to the phenix.refine command line results in the log file containing memory usage throughout the run. Look for the max memory intake in the last record (towards the end of log file). This will give you an idea about how much memory you may need. | |||
It might well be that this also works for the other phenix tools. | |||
== Refinement with mmtbx.lockit == | == Refinement with mmtbx.lockit == | ||