5
edits
Scripts and interfaces: Difference between revisions
Jump to navigation
Jump to search
→autoProcess
| Line 17: | Line 17: | ||
script in use at SSRL (Stanford) . See [A Quick XDS Tutorial for SSRL http://smb.slac.stanford.edu/facilities/software/xds/]. Download: http://smb.slac.stanford.edu/templates/xds/autoxds ; download http://smb.slac.stanford.edu/templates/xds/mccd_xdsparams.pl , too! | script in use at SSRL (Stanford) . See [A Quick XDS Tutorial for SSRL http://smb.slac.stanford.edu/facilities/software/xds/]. Download: http://smb.slac.stanford.edu/templates/xds/autoxds ; download http://smb.slac.stanford.edu/templates/xds/mccd_xdsparams.pl , too! | ||
== | == AutoProcess == | ||
Pipeline developed by Michel Fodje at Canadian Macromolecular Crystallography Facility (Saskatoon). | |||
Usage: | |||
autoprocess [options] /path/to/set1.img /path/to/set2.img ... /path/to/setn.img | |||
options: | |||
--mad, -m : Process each set, scale together and generate separate reflection files. | |||
--screen, -s : Process a few frames from characterize crystal from each set. | |||
--anom, -a : Process with Friedel's law False | |||
--backup, -b : Backup previous output directory if it exists | |||
--prefix=p1,p2,p3 : comma separated list of prefixes to use for output files. | |||
Default is first part of image name | |||
prefix order should correspond to the order of the data sets | |||
for example for MAD data, use --prefix=peak,infl,remo | |||
--dir=/path : Directory to store processed results. Default is to create a new one in the current directory. | |||
--inputs, -i: generate XDS.INP only and quit | |||
--help, -h : display this message | |||
Default (no option): Process each set, scale together and merge into one reflection file. | |||
Data sets: | |||
Each data set can be represented by any frame from that set. | |||
== xdsme == | == xdsme == | ||