2,652
edits
Installation: Difference between revisions
Jump to navigation
Jump to search
→Mac (Intel)
| Line 89: | Line 89: | ||
== Mac (Intel) == | == Mac (Intel) == | ||
=== personal installation === | === personal installation === | ||
cd / | Preparation: | ||
* make sure your $PATH includes your $HOME/bin - the programs will be put into that directory. To achieve this, open a Terminal window, and then | |||
<pre> | |||
cd $HOME | |||
echo "export PATH=$HOME:$HOME/bin" >> .bashrc | |||
</pre> | |||
* create that directory. Still in the Terminal window, type | |||
<pre> | |||
mkdir $HOME/bin | |||
</pre> | |||
Install generate_XDS.INP: | |||
<pre> | |||
cd $HOME/bin | |||
curl -L -o - http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/generate_XDS.INP | \ | curl -L -o - http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/generate_XDS.INP | \ | ||
sed -e s/\ \;/\ /g -e s/\>\;/\>/g -e s/\<\;/\</g -e s/amp\;//g -e s/\"\;/\"/g -e s/\&\#\1\6\0\;/\ /g | \ | sed -e s/\ \;/\ /g -e s/\>\;/\>/g -e s/\<\;/\</g -e s/amp\;//g -e s/\"\;/\"/g -e s/\&\#\1\6\0\;/\ /g | \ | ||
| Line 95: | Line 107: | ||
chmod +x generate_XDS.INP | chmod +x generate_XDS.INP | ||
</pre> | </pre> | ||
* to get [[XDS]], for latest OS X (Mavericks): | |||
<pre> | <pre> | ||
cd $HOME/bin | |||
curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.9.1_Darwin13.0.0.tar.gz | tar xvf - | curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.9.1_Darwin13.0.0.tar.gz | tar xvf - | ||
ln -sf XDS-OSX10.9.1_Darwin13.0.0/* . | ln -sf XDS-OSX10.9.1_Darwin13.0.0/* . | ||
</pre> | </pre> | ||
(for older OS X, that would be | |||
<pre> | <pre> | ||
curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.5.8_Darwin9.8.0.tar.gz | tar xvf - | curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.5.8_Darwin9.8.0.tar.gz | tar xvf - | ||
ln -sf XDS-OSX10.5.8_Darwin9.8.0/* . | ln -sf XDS-OSX10.5.8_Darwin9.8.0/* . | ||
</pre> | </pre> | ||
There is also a 32bit tarfile at the same site, for OS X 10.4.11; the installation would be similar) | |||
To get [[XDS-Viewer]], click https://sourceforge.net/project/platformdownload.php?group_id=239755 , install in the usual way and then | To get [[XDS-Viewer]], click https://sourceforge.net/project/platformdownload.php?group_id=239755 , install in the usual way and then | ||
ln -s /Applications/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin $HOME/bin/xds-viewer | |||
To get [[XDSSTAT]], | To get [[XDSSTAT]], | ||
<pre> | <pre> | ||
cd $HOME/bin | |||
curl -L -o xdsstat.bz2 ftp://turn5.biologie.uni-konstanz.de/pub/xdsstat-i386-mac.bz2 | curl -L -o xdsstat.bz2 ftp://turn5.biologie.uni-konstanz.de/pub/xdsstat-i386-mac.bz2 | ||
bunzip2 -f xdsstat.bz2 | bunzip2 -f xdsstat.bz2 | ||
| Line 116: | Line 130: | ||
</pre> | </pre> | ||
To get [[XDSGUI]], please download from ftp://turn5.biologie.uni-konstanz.de/pub/xdsgui.dmg and then | To get [[XDSGUI]], please download from ftp://turn5.biologie.uni-konstanz.de/pub/xdsgui.dmg and then | ||
ln -s /Applications/xdsgui.app/Contents/MacOS/xdsgui $HOME/bin/xdsgui | |||
=== installation | === system-wide installation (requires root permission) === | ||
sudo su | sudo su | ||
(enter your root password) | (enter your root password) | ||