2,684
edits
Installation: Difference between revisions
Jump to navigation
Jump to search
→Mac (Intel)
| Line 94: | Line 94: | ||
cd $HOME | cd $HOME | ||
echo 'export PATH=$HOME:$HOME/bin' >> .bashrc | echo 'export PATH=$HOME:$HOME/bin' >> .bashrc | ||
</pre> | </pre> | ||
* create the $HOME/bin and $HOME/Applications directories. Still in the Terminal window, type | * create the $HOME/bin and $HOME/Applications directories. Still in the Terminal window, type | ||
| Line 99: | Line 100: | ||
mkdir $HOME/bin | mkdir $HOME/bin | ||
mkdir $HOME/Applications | mkdir $HOME/Applications | ||
</pre> | </pre> | ||
'''To install [[generate_XDS.INP]]''': | '''To install [[generate_XDS.INP]]''': | ||
| Line 107: | Line 109: | ||
sed '/# end of generate_XDS.INP/,$d' | awk '/^#/,/rm -f tmp1 tmp2/' > generate_XDS.INP | sed '/# end of generate_XDS.INP/,$d' | awk '/^#/,/rm -f tmp1 tmp2/' > generate_XDS.INP | ||
chmod +x generate_XDS.INP | chmod +x generate_XDS.INP | ||
</pre> | </pre> | ||
'''To install [[XDS]], for latest OS X (Mavericks)''': | '''To install [[XDS]], for latest OS X (Mavericks)''': | ||
| Line 119: | Line 122: | ||
curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.5.8_Darwin9.8.0.tar.gz | tar xvf - | curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.5.8_Darwin9.8.0.tar.gz | tar xvf - | ||
ln -sf XDS-OSX10.5.8_Darwin9.8.0/* . | ln -sf XDS-OSX10.5.8_Darwin9.8.0/* . | ||
</pre> | </pre> | ||
There is also a 32bit tarfile at the same site, for OS X 10.4.11 - Tiger; the installation would be similar) | There is also a 32bit tarfile at the same site, for OS X 10.4.11 - Tiger; the installation would be similar) | ||
| Line 125: | Line 129: | ||
cp -pr /Volumes/XDS-Viewer/XDS-Viewer.app/ $HOME/Applications | cp -pr /Volumes/XDS-Viewer/XDS-Viewer.app/ $HOME/Applications | ||
ln -s $HOME/Applications/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin $HOME/bin/xds-viewer | ln -s $HOME/Applications/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin $HOME/bin/xds-viewer | ||
'''To install [[XDSSTAT]]''', | '''To install [[XDSSTAT]]''', | ||
<pre> | <pre> | ||
| Line 131: | Line 136: | ||
bunzip2 -f xdsstat.bz2 | bunzip2 -f xdsstat.bz2 | ||
chmod a+x xdsstat | chmod a+x xdsstat | ||
</pre> | </pre> | ||
'''To install [[XDSGUI]]''', please download from ftp://turn5.biologie.uni-konstanz.de/pub/xdsgui.dmg, open up the downloaded xdsgui.app by clicking, and then (once you see it in the Finder), go to the Terminal and | '''To install [[XDSGUI]]''', please download from ftp://turn5.biologie.uni-konstanz.de/pub/xdsgui.dmg, open up the downloaded xdsgui.app by clicking, and then (once you see it in the Finder), go to the Terminal and | ||
cp -pr /Volumes/xdsgui/xdsgui.app/ $HOME/Applications | cp -pr /Volumes/xdsgui/xdsgui.app/ $HOME/Applications | ||
ln -s $HOME/Applications/xdsgui.app/Contents/MacOS/xdsgui $HOME/bin/xdsgui | ln -s $HOME/Applications/xdsgui.app/Contents/MacOS/xdsgui $HOME/bin/xdsgui | ||
Please also check [[XDSGUI#Installation]]. | Please also check [[XDSGUI#Installation]]. | ||
| Line 151: | Line 157: | ||
sed '/# end of generate_XDS.INP/,$d' | awk '/^#/,/rm -f tmp1 tmp2/' > generate_XDS.INP | sed '/# end of generate_XDS.INP/,$d' | awk '/^#/,/rm -f tmp1 tmp2/' > generate_XDS.INP | ||
chmod +x generate_XDS.INP | chmod +x generate_XDS.INP | ||
</pre> | </pre> | ||
To get [[XDS]], for latest OS X (Mavericks): | To get [[XDS]], for latest OS X (Mavericks): | ||
| Line 156: | Line 163: | ||
curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.9.1_Darwin13.0.0.tar.gz | tar xvf - | curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.9.1_Darwin13.0.0.tar.gz | tar xvf - | ||
ln -sf XDS-OSX10.9.1_Darwin13.0.0/* . | ln -sf XDS-OSX10.9.1_Darwin13.0.0/* . | ||
</pre> | </pre> | ||
and for older OS X: | and for older OS X: | ||
| Line 161: | Line 169: | ||
curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.5.8_Darwin9.8.0.tar.gz | tar xvf - | curl -L -o - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-OSX10.5.8_Darwin9.8.0.tar.gz | tar xvf - | ||
ln -sf XDS-OSX10.5.8_Darwin9.8.0/* . | ln -sf XDS-OSX10.5.8_Darwin9.8.0/* . | ||
</pre> | </pre> | ||
(There is also a 32bit tarfile at the same site, for OS X 10.4.11; the installation would be similar) | (There is also a 32bit tarfile at the same site, for OS X 10.4.11; the installation would be similar) | ||
| Line 166: | Line 175: | ||
To get [[XDS-Viewer]], click https://sourceforge.net/project/platformdownload.php?group_id=239755 , install in the usual way and then | To get [[XDS-Viewer]], click https://sourceforge.net/project/platformdownload.php?group_id=239755 , install in the usual way and then | ||
sudo ln -s /Applications/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin /usr/local/bin/xds-viewer | sudo ln -s /Applications/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin /usr/local/bin/xds-viewer | ||
To get [[XDSSTAT]], | To get [[XDSSTAT]], | ||
<pre> | <pre> | ||
| Line 171: | Line 181: | ||
bunzip2 -f xdsstat.bz2 | bunzip2 -f xdsstat.bz2 | ||
chmod a+x xdsstat | chmod a+x xdsstat | ||
</pre> | </pre> | ||
To get [[XDSGUI]], please download from ftp://turn5.biologie.uni-konstanz.de/pub/xdsgui.dmg and then | To get [[XDSGUI]], please download from ftp://turn5.biologie.uni-konstanz.de/pub/xdsgui.dmg and then | ||
sudo ln -s /Applications/xdsgui.app/Contents/MacOS/xdsgui /usr/local/bin/xdsgui | sudo ln -s /Applications/xdsgui.app/Contents/MacOS/xdsgui /usr/local/bin/xdsgui | ||
Please also check [[XDSGUI#Installation]]. | Please also check [[XDSGUI#Installation]]. | ||