2cbf: Difference between revisions

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934 bytes removed ,  21 March 2021
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(improve example)
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This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory.
This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory.


For 2cbf to work with the [http://xds.mpimf-heidelberg.mpg.de/html_doc/xds_parameters.html#LIB= LIB=] option, it is mandatory to have a filename like test_123456.xy, i.e. with a 6-digit number and a 2-letter extension. If you want to use LIB= and your filenames do not follow this pattern, just symlink them, and construct the symlinks accordingly: e.g.
To have control over the number of digits encoding the frame number, one can use bash's printf command. Example:
<pre>
<pre>
#!/bin/bash
#!/bin/bash
# purpose: create symlinks for xds_par
# usage: mklinks
for j in $(seq 1 120); do
for j in $(seq 1 120); do
   ln -sfn Data_02_$(printf "%04d" "$j").sfrm Data_02_$(printf "%06d" "$j").sf
   echo Data_02_$(printf "%04d" "$j").sfrm  
done
done
echo ready
</pre>
</pre>


If you don't do this, you'll get an error message like
To convert frames stored in Dectris-format .h5 files, one should replace "master" with a 6-digit framenumber, and use the [https://xds.mr.mpg.de/html_doc/xds_parameters.html#LIB= LIB=] keyword:
<pre>
  echo collect_01_000001.h5 collect_1.cbf LIB=/usr/local/lib64/dectris-neggia.so | 2cbf
forrtl: severe (59): list-directed I/O syntax error, unit -5, file Internal List-Directed Read
Image              PC                Routine            Line        Source           
2cbf              000000000041DCDC  Unknown              Unknown  Unknown
2cbf              00000000004476AA  Unknown              Unknown  Unknown
2cbf              0000000000445C2B  Unknown              Unknown Unknown
2cbf              00000000004059B8  getfrm_                  1713  MAIN_2CBF.f90
2cbf              0000000000404C6A  MAIN__                    58  MAIN_2CBF.f90
2cbf              0000000000402ADE  Unknown              Unknown  Unknown
libc-2.17.so       00007FB47339BB35  __libc_start_main    Unknown  Unknown
2cbf               00000000004029E9  Unknown              Unknown  Unknown
</pre>
2,684

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