2,722
edits
Topics: Difference between revisions
→Using XDS: add link to PDF
No edit summary |
(→Using XDS: add link to PDF) |
||
| (16 intermediate revisions by 2 users not shown) | |||
| Line 3: | Line 3: | ||
* [[XSCALE]] | * [[XSCALE]] | ||
* [[XDSCONV]] | * [[XDSCONV]] | ||
* [[VIEW]] | * [[VIEW]] (obsolete) | ||
* [[XDS-Viewer]] open-source [[VIEW]] replacement | |||
* [[XDSSTAT]] (this is not part of the XDS package) | * [[XDSSTAT]] (this is not part of the XDS package) | ||
* [[Jiffies]] (little helpful scripts) | * [[Jiffies]] (little helpful scripts) | ||
* [[SIM_MX]] (this is not part of the XDS package) | |||
* [[adxv]] (this is not part of the XDS package) | |||
* [[XDSGUI]] (this is not part of the XDS package) | |||
== Using XDS == | == Using XDS == | ||
* [https://www.youtube.com/watch?v=3WU9NrILECo XDS and XDSGUI. SBGrid Webinar by Kay Diederichs, May 2020] [https://strucbio.biologie.uni-konstanz.de/pub/Crystallographic_data_processing_with_XDS_using_XDSGUI.pdf slides of the talk] | |||
* [[XDS.INP]] | * [[XDS.INP]] | ||
* [[generate_XDS.INP]] - quick procedure to obtain XDS.INP for MarCCD, ADSC, Pilatus, ... detectors | |||
* [[Tutorial(First_Steps)|Tutorial]] Quick beginner's walk-through if you just want to get going. | |||
* [https://{{SERVERNAME}}/pub/MWhitley_CSHL-2018_XDS-Tutorial.pdf Matthew J. Whitley's excellent tutorial] about XDS processing with [[XDSGUI]], from the 2018 CSHL X-Ray Methods in Structural Biology Course. | |||
* [[FAQ]] | |||
* [[Processing]] | * [[Processing]] | ||
* [[IDXREF]] with subtopics [[Obtaining ORGX ORGY]], [[Ice rings]], [[Indexing]], [[Reindexing]] | * [[IDXREF]] with subtopics [[Obtaining ORGX ORGY]], [[Ice rings]], [[Indexing]], [[Reindexing]] | ||
* [[CORRECT]], see | * [[CORRECT]] | ||
* [[Small molecules]] how to process difficult datasets, or those with few reflections | |||
* worked-out '''examples''': see in particular the five projects ([[2QVO]], [[3CSL]], [[simulated-1g1c]], [[1Y13]] and [[2VB1]]) at the bottom of [[Quality Control]]. | |||
* [[XDSGUI]] | |||
* [https://www.youtube.com/watch?v=XBgqiEXQR-0 Principles of data processing with XDS.] Video recorded at SBGrid/NE-CAT workshop 2014; the PDF is [https://strucbio.biologie.uni-konstanz.de/pub/Principles_of_data_processing_with_XDS.pdf here]. The sound is poor. | |||
== Typical procedures == | == Typical procedures == | ||
| Line 29: | Line 42: | ||
== external Links == | == external Links == | ||
* [ | * [https://xia2.github.io/ xia2] Automated Data Reduction | ||