Adxv: Difference between revisions
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The | The ADXV program can be downloaded from http://www.scripps.edu/tainer/arvai/adxv.html . The manual is at https://www.scripps.edu/tainer/arvai/adxv/AdxvUserManual.pdf . | ||
== What if the Image Window doesn't refresh correctly under | == What if the Image Window doesn't refresh correctly under x2go ? == | ||
https://wiki.x2go.org/doku.php X2go is based on an old version of the NoMachine NX libraries. These had a bug which must be worked around. | |||
You may have try adding an option to /etc/x2go/x2goagent.options ; earlier versions of the NX software required the following addition to /usr/NX/etc/node.cfg : | |||
AgentExtraOptions="-defer 0" | |||
Finally, try using "adxv -nopixmap" | |||
Please also check out https://wiki.x2go.org/doku.php/doc:de-compat | |||
== Visualizing XDS data reduction == | == Visualizing XDS data reduction == | ||
ADXV can read spot files (whose name ends with .adx) and display them together with the frames. | |||
These spot files can be written by [[generate_adx]]. In adxv's file selection window, it is useful to change the filename pattern from e.g. "*.cbf" to just "*" which then gives you the possibility to load frames and spot files at will. | These spot files can be written by [[generate_adx]]. In adxv's file selection window, it is useful to change the filename pattern from e.g. "*.cbf" to just "*" which then gives you the possibility to load frames and spot files at will. | ||
If using ADXV on a NoMachine (NX) desktop, it is useful to know that one needs the -nopixmap commandline option if the frame is not correctly displayed (I found that the zoom window still does not display correctly). | If using ADXV on a NoMachine (NX) desktop, it is useful to know that one needs the -nopixmap commandline option if the frame is not correctly displayed (I found that the zoom window still does not display correctly). | ||
Latest revision as of 18:12, 19 March 2021
The ADXV program can be downloaded from http://www.scripps.edu/tainer/arvai/adxv.html . The manual is at https://www.scripps.edu/tainer/arvai/adxv/AdxvUserManual.pdf .
What if the Image Window doesn't refresh correctly under x2go ?
https://wiki.x2go.org/doku.php X2go is based on an old version of the NoMachine NX libraries. These had a bug which must be worked around.
You may have try adding an option to /etc/x2go/x2goagent.options ; earlier versions of the NX software required the following addition to /usr/NX/etc/node.cfg :
AgentExtraOptions="-defer 0"
Finally, try using "adxv -nopixmap"
Please also check out https://wiki.x2go.org/doku.php/doc:de-compat
Visualizing XDS data reduction
ADXV can read spot files (whose name ends with .adx) and display them together with the frames.
These spot files can be written by generate_adx. In adxv's file selection window, it is useful to change the filename pattern from e.g. "*.cbf" to just "*" which then gives you the possibility to load frames and spot files at will.
If using ADXV on a NoMachine (NX) desktop, it is useful to know that one needs the -nopixmap commandline option if the frame is not correctly displayed (I found that the zoom window still does not display correctly).