Installation: Difference between revisions

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If you want to process data from the [[Eiger]] detector: see below for plugins that allow XDS to read the .h5 files. Similarly for gzip-ed CBF files as mostly collected at EMBL Hamburg.

==== System libraries that the XDS package needs ====

The programs of the XDS package depend on commonly installed libraries. The complete list, with paths and versions, can be obtained on the commandline:

[kay@linux ~]$ ldd $(which xds_par)

linux-vdso.so.1 (0x00007f96ab59d000)

libdl.so.2 => /lib64/libdl.so.2 (0x00007f96ab57a000)

libm.so.6 => /lib64/libm.so.6 (0x00007f96ab49f000)

libgomp.so.1 => /lib64/libgomp.so.1 (0x00007f96ab459000)

libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f96ab43f000)

libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f96ab43a000)

libc.so.6 => /lib64/libc.so.6 (0x00007f96ab200000)

/lib64/ld-linux-x86-64.so.2 (0x00007f96ab59f000)

If any of the libraries is not available, the affected program does not run but the operating system tells you which library is missing. Until recently, Linux distributions came with these libraries pre-installed. However, recently it came to my attention that a minimal version of Ubuntu 24 may not provide the libgomp.so library. If you run this distribution, your system administrator should install the libgomp1 package.

=== other programs: [[XDS-Viewer]], [[XDSSTAT]], [[XDSCC12]], [[XDSGUI]], [[XSCALE_ISOCLUSTER]], [[spot2pdb]], [[generate_XDS.INP]] ===

@@ Line 20: / Line 20: @@
 If you want to process data from the [[Eiger]] detector: see below for plugins that allow XDS to read the .h5 files. Similarly for gzip-ed CBF files as mostly collected at EMBL Hamburg.
+==== System libraries that the XDS package needs ====
+The programs of the XDS package depend on commonly installed libraries. The complete list, with paths and versions, can be obtained on the commandline:
+ [kay@linux ~]$ ldd $(which xds_par)
+ 	linux-vdso.so.1 (0x00007f96ab59d000)
+ 	libdl.so.2 => /lib64/libdl.so.2 (0x00007f96ab57a000)
+ 	libm.so.6 => /lib64/libm.so.6 (0x00007f96ab49f000)
+ 	libgomp.so.1 => /lib64/libgomp.so.1 (0x00007f96ab459000)
+ 	libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f96ab43f000)
+ 	libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f96ab43a000)
+ 	libc.so.6 => /lib64/libc.so.6 (0x00007f96ab200000)
+ 	/lib64/ld-linux-x86-64.so.2 (0x00007f96ab59f000)
+If any of the libraries is not available, the affected program does not run but the operating system tells you which library is missing. Until recently, Linux distributions came with these libraries pre-installed. However, recently it came to my attention that a minimal version of Ubuntu 24 may not provide the libgomp.so library. If you run this distribution, your system administrator should install the libgomp1 package.
 === other programs: [[XDS-Viewer]], [[XDSSTAT]], [[XDSCC12]], [[XDSGUI]], [[XSCALE_ISOCLUSTER]], [[spot2pdb]], [[generate_XDS.INP]]  ===