Installation: Difference between revisions

Installation (view source)

Revision as of 14:12, 8 October 2018

193 bytes removed , 8 October 2018

→‎other programs: XDS-Viewer, XDSSTAT, XDSCC12, XDSGUI, XSCALE_ISOCLUSTER

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 === other programs: [[XDS-Viewer]], [[XDSSTAT]], [[XDSCC12]], [[XDSGUI]], [[XSCALE_ISOCLUSTER]]  ===
-... can be downloaded from ftp://turn5.biologie.uni-konstanz.de/pub/mac_bin/ . A simple way to obtain them is
+... can be downloaded from ftp://turn5.biologie.uni-konstanz.de/pub/mac_bin/ . A simple way to obtain them is is to open a Terminal, and type:
   sudo su
 which asks for the password and gives you administrator permissions. Then,
+ # any folder would do; here we use /usr/local/bin/mac_bin
+ mkdir -p /usr/local/bin/mac_bin
+ cd /usr/local/bin/mac_bin
   curl -O -R ftp://turn5.biologie.uni-konstanz.de/pub/mac_bin/get_folder.sh
   chmod +x get_folder.sh
   ./get_folder.sh
-Then, using the Finder window which should have opened automagically, install XDSGUI and XDS-Viewer graphically, by pulling them into the Applications folder.
+If you want to update the programs some time later, just run these commands again.
 In order to enable [[Eiger]] data processing, the <code>get_folder.sh</code> script
 # copies Dectris' Neggia library into /usr/local/lib64
-# copies [[Eiger#General_aspects|eiger2cbf-osx]] into /usr/local/bin, but under the name <code>H5ToXds</code>.
+# copies [[Eiger#General_aspects|eiger2cbf-osx]] into /usr/local/bin, but under the name <code>H5ToXds</code>
-[[Generate_XDS.INP]] requires <code>h5dump</code> , and either you install this through [https://en.wikipedia.org/wiki/Homebrew_(package_management_software) homebrew]
+# copies [https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.7/bin/mac-intel-x86_64/utilities/h5dump version 1.8.7] of <code>h5dump</code> into /usr/local/bin
- brew install hdf5
-or you install [http://phenix-online.org Phenix] in which case the <code>h5dump</code> provided by the Phenix package will be used by [[Generate_XDS.INP]].
-Since the script updates itself, it may have to be run twice, unless you freshly downloaded it.
 Lastly, it is useful (for e.g. XDSGUI) to install <code>xxdiff</code> from http://furius.ca/downloads/xxdiff/releases/macosx/