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2cbf: Difference between revisions
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[http://xds.mpimf-heidelberg.mpg.de/html_doc/2cbf_program.html 2cbf] is part of the [[XDS]] distribution. It converts any image file format that is | [http://xds.mpimf-heidelberg.mpg.de/html_doc/2cbf_program.html 2cbf] is part of the [[XDS]] distribution. It converts any image file format that is known to XDS to a miniCBF file. This program is also used by [[XDSGUI]]. | ||
For 2cbf to work with the LIB= option, it is mandatory to have a filename like test_123456.xy, i.e. with a 6-digit number and a 2-letter extension. If you want to use LIB= and your filenames do not follow this pattern, just symlink them, and construct the symlinks accordingly. | Single-line example (bash shell): | ||
for i in ../images/*img ; do echo $i; echo $i `basename $i`.cbf | 2cbf ; done | |||
This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory. | |||
For 2cbf to work with the [http://xds.mpimf-heidelberg.mpg.de/html_doc/xds_parameters.html#LIB= LIB=] option, it is mandatory to have a filename like test_123456.xy, i.e. with a 6-digit number and a 2-letter extension. If you want to use LIB= and your filenames do not follow this pattern, just symlink them, and construct the symlinks accordingly: e.g. | |||
<pre> | |||
#!/bin/bash | |||
# purpose: create symlinks for xds_par | |||
# usage: mklinks | |||
for j in $(seq 1 120); do | |||
ln -sfn Data_02_$(printf "%04d" "$j").sfrm Data_02_$(printf "%06d" "$j").sf | |||
done | |||
echo ready | |||
</pre> | |||
If you don't do this, you'll get an error message like | If you don't do this, you'll get an error message like | ||