Installation: Difference between revisions

(One intermediate revision by the same user not shown)
Line 81: Line 81:
=== [[XDS]] package ===
=== [[XDS]] package ===
If you are an academic user,
If you are an academic user,
==== Intel processor ====


  echo you may have to "sudo su" first, to obtain administrator permissions!
  echo you may have to "sudo su" first, to obtain administrator permissions!
Line 93: Line 91:
if you get a security error popup (google "xattr com.apple.quarantine catalina").
if you get a security error popup (google "xattr com.apple.quarantine catalina").


==== Apple M1 processor ====
Then make sure that the binaries are in the search path for executables, as explained in https://xds.mr.mpg.de/html_doc/downloading.html .
 
==== considerations for a macOS machine with Apple M1 processor ====


echo you may have to "sudo su" first, to obtain administrator permissions!
Change the above <code>curl</code> and <code>ln</code> commands to
cd /usr/local/bin
  curl -L -o - https://xds.mr.mpg.de/XDS-Apple_M1.tar.gz | tar xzvf -
  curl -L -o - https://xds.mr.mpg.de/XDS-Apple_M1.tar.gz | tar xzvf -
  ln -sf XDS-Apple_M1/* .
  ln -sf XDS-Apple_M1/* .
Line 168: Line 167:
A lot of technical detail is at [https://docs.microsoft.com/en-us/windows/wsl/compare-versions] .
A lot of technical detail is at [https://docs.microsoft.com/en-us/windows/wsl/compare-versions] .


CCP4 supports WSL-1 ; see info at http://www.ccp4.ac.uk/download/#os=wsl .
CCP4 documents use of WSL-1 ; see info at http://www.ccp4.ac.uk/download/#os=wsl .


Graphical Linux programs require installation of a X server like [https://sourceforge.net/projects/xming/files/latest/download Xming] or [https://sourceforge.net/projects/vcxsrv VcXsvr] or [https://mobaxterm.mobatek.net/ Mobaxterm] on the Windows host. There are helpful writeups (e.g. [https://wiki.ubuntu.com/WSL#Running_Graphical_Applications] and [http://wsl-guide.org/en/latest/]). VcXsrc seems to have a problem with coot for some people (see [https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=COOT;6ef4a967.2011 WSL2 installation] and responses). To use the X server with WSL, one has to say in the shell window
Graphical Linux programs require installation of a X server like [https://sourceforge.net/projects/xming/files/latest/download Xming] or [https://sourceforge.net/projects/vcxsrv VcXsvr] or [https://mobaxterm.mobatek.net/ Mobaxterm] on the Windows host. There are helpful writeups (e.g. [https://wiki.ubuntu.com/WSL#Running_Graphical_Applications] and [http://wsl-guide.org/en/latest/]). VcXsrc seems to have a problem with coot for some people (see [https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=COOT;6ef4a967.2011 WSL2 installation] and responses). To use the X server with WSL, one has to say in the shell window
2,652

edits