User contributions for Kay

15:1715:17, 16 July 2019 diff hist −164‎ Reflection files format ‎ →‎LCF current
10:3810:38, 16 July 2019 diff hist 0‎ Reflection files format ‎ →‎LCF
10:2110:21, 16 July 2019 diff hist +54‎ Reflection files format ‎ →‎LCF
09:4009:40, 16 July 2019 diff hist +205‎ Reflection files format ‎ →‎LCF: get ncol from header
09:3309:33, 16 July 2019 diff hist +431‎ Coot ‎ →‎Molprobity not active in COOT

21:2821:28, 15 July 2019 diff hist +2‎ m Reflection files format ‎ →‎LCF
13:2713:27, 15 July 2019 diff hist +119‎ Reflection files format ‎ →‎LCF
12:1312:13, 15 July 2019 diff hist +72‎ Reflection files format ‎ →‎LCF

21:4821:48, 14 July 2019 diff hist +13‎ Reflection files format ‎ →‎LCF
21:2921:29, 14 July 2019 diff hist +1,751‎ Reflection files format ‎ →‎LCF

16:0416:04, 2 July 2019 diff hist +7,957‎ N Reflection files format ‎ Created page with "CCP4 reflection files are binary files that are usually read by routines from CCP4 libraries. However, sometimes one wants to read them with a different programming language o..."

12:3212:32, 9 May 2019 diff hist +9‎ Phenix ‎ →‎Ligands
10:4010:40, 9 May 2019 diff hist +18‎ Bootable Linux USB stick ‎No edit summary current

12:3112:31, 8 May 2019 diff hist +581‎ Properties of proteins ‎ →‎Ideal metal bond distances current

21:3121:31, 1 April 2019 diff hist +122‎ Phenix ‎ link to phenixBB added
21:2221:22, 1 April 2019 diff hist +639‎ Phenix ‎ →‎phenix.elbow - electronic Ligand Builder and Optimisation Workbench: according to phenixBB 1.4.2019

10:4910:49, 18 March 2019 diff hist +119‎ Mapping sequence alignment to a structure ‎ update links and expand consurf info current

17:1617:16, 17 February 2019 diff hist +47‎ Bootable Linux USB stick ‎ add "Linux on Macbook Pro" link

10:4410:44, 15 January 2019 diff hist +467‎ Phenix ‎ →‎Occupancy
10:3810:38, 15 January 2019 diff hist +258‎ Phenix ‎ →‎Switching off specific interactions

22:1622:16, 7 January 2019 diff hist +376‎ Stereo ‎ →‎Linux
22:1222:12, 7 January 2019 diff hist +38‎ Stereo ‎ →‎See also

13:2113:21, 11 December 2018 diff hist +101‎ Bootable Linux USB stick ‎No edit summary

15:4415:44, 2 December 2018 diff hist +24‎ Phenix ‎ →‎Installation from source, and of Rosetta interface
15:1315:13, 2 December 2018 diff hist +17‎ Phenix ‎ →‎Installation from source, and of Rosetta interface
13:2213:22, 2 December 2018 diff hist −26‎ Phenix ‎ →‎Installation from source, and of Rosetta interface

13:2313:23, 30 November 2018 diff hist +10‎ Stereo ‎ →‎Nvidia 3D Vision 2

13:1613:16, 19 August 2018 diff hist +177‎ Bootable Linux USB stick ‎ update Mac setup quirks

19:5719:57, 18 August 2018 diff hist +199‎ Bootable Linux USB stick ‎No edit summary

12:2612:26, 23 July 2018 diff hist −10‎ Bootable Linux USB stick ‎ →‎install Fedora

15:0115:01, 19 July 2018 diff hist −12‎ Bootable Linux USB stick ‎ →‎USB sticks

14:1214:12, 16 July 2018 diff hist +125‎ Bootable Linux USB stick ‎ Ubuntu

13:1413:14, 11 July 2018 diff hist +1‎ Bootable Linux USB stick ‎ →‎generating images and copies of the stick
09:4709:47, 11 July 2018 diff hist +183‎ Servers for ligand topologies/parameters ‎ →‎How to generate topology/parameter files for unknown ligand current

09:0709:07, 8 July 2018 diff hist +7‎ Crystallography ‎ →‎Slides showing the effect of resolution on electron density [http://www.ysbl.york.ac.uk/~emsley/coot/slides/reso-slides/]
09:0009:00, 8 July 2018 diff hist +30‎ Xtal computing ‎No edit summary current
08:5708:57, 8 July 2018 diff hist +410‎ Servers for ligand topologies/parameters ‎No edit summary

18:0418:04, 7 July 2018 diff hist +3‎ Phenix ‎ →‎Hydrogens
16:5716:57, 7 July 2018 diff hist −1,334‎ Phenix ‎ →‎Refinement with mmtbx.lockit: remove

13:4513:45, 6 July 2018 diff hist +11‎ Phenix ‎ →‎TLS

21:2921:29, 22 June 2018 diff hist +276‎ Bootable Linux USB stick ‎ →‎install Fedora
20:5920:59, 22 June 2018 diff hist +55‎ Bootable Linux USB stick ‎ →‎install Fedora
20:5120:51, 22 June 2018 diff hist +156‎ Bootable Linux USB stick ‎ →‎install Fedora: mention APFS
20:4520:45, 22 June 2018 diff hist +23‎ Bootable Linux USB stick ‎No edit summary

21:0421:04, 7 June 2018 diff hist +45‎ Bootable Linux USB stick ‎ →‎Low-level formatting of (micro)SD cards
21:0221:02, 7 June 2018 diff hist +7‎ Bootable Linux USB stick ‎ →‎fill empty space of a partition with “zeroes”

10:2610:26, 25 May 2018 diff hist −20‎ Refinement ‎ →‎Refining low resolution structures

14:3314:33, 11 May 2018 diff hist +205‎ SHELX C/D/E ‎ →‎References
14:2514:25, 11 May 2018 diff hist +919‎ SHELX C/D/E ‎ →‎Full list of SHELXE options (defaults in brackets): document the output of -x option

08:4308:43, 30 April 2018 diff hist −4‎ Bootable Linux USB stick ‎ →‎generating images and copies of the stick
08:3908:39, 30 April 2018 diff hist +43‎ Bootable Linux USB stick ‎ →‎Install grub2 for BIOS boot (from chroot environment)
08:1108:11, 30 April 2018 diff hist −97‎ Bootable Linux USB stick ‎ →‎adjust the USB-stick for UEFI/EFI boot (before reboot from chroot environment)
08:0808:08, 30 April 2018 diff hist +1‎ Bootable Linux USB stick ‎No edit summary

15:0015:00, 4 April 2018 diff hist −39‎ Bootable Linux USB stick ‎No edit summary
14:5314:53, 4 April 2018 diff hist +11‎ Bootable Linux USB stick ‎ →‎initializing the media
14:4814:48, 4 April 2018 diff hist −25‎ Bootable Linux USB stick ‎ →‎types of USB media

11:3211:32, 31 March 2018 diff hist −5‎ CC1/2 ‎No edit summary current

10:3610:36, 31 January 2018 diff hist +39‎ Twinning ‎ →‎Warning Signs for Twinning

13:2113:21, 24 January 2018 diff hist −83‎ Phenix ‎ →‎NCS

13:0713:07, 23 January 2018 diff hist +627‎ Bootable Linux USB stick ‎ →‎types of USB media
12:5212:52, 23 January 2018 diff hist −1‎ Bootable Linux USB stick ‎ →‎Install grub2 for BIOS boot (from chroot environment)
12:4412:44, 23 January 2018 diff hist −2‎ Bootable Linux USB stick ‎ →‎generating images and copies of the stick
12:4212:42, 23 January 2018 diff hist −1,010‎ Bootable Linux USB stick ‎ →‎Problems on old BIOS hardware
12:4212:42, 23 January 2018 diff hist 0‎ Bootable Linux USB stick ‎ →‎Hardware considerations
12:4012:40, 23 January 2018 diff hist −3‎ Bootable Linux USB stick ‎ →‎fill empty space of a partition with “zeroes”
12:3812:38, 23 January 2018 diff hist −51‎ Bootable Linux USB stick ‎ →‎fill empty space of a partition with “zeroes”

22:5222:52, 21 January 2018 diff hist +262‎ Bootable Linux USB stick ‎ →‎Hardware considerations
18:3918:39, 21 January 2018 diff hist +61‎ Bootable Linux USB stick ‎ →‎Hardware considerations
16:1516:15, 21 January 2018 diff hist −11‎ Bootable Linux USB stick ‎ →‎USB stick: hardware considerations
16:1416:14, 21 January 2018 diff hist −88‎ Bootable Linux USB stick ‎ →‎USB stick: hardware considerations
16:0916:09, 21 January 2018 diff hist +16‎ Bootable Linux USB stick ‎ →‎types of USB media

22:5022:50, 20 January 2018 diff hist +93‎ Bootable Linux USB stick ‎ →‎types of USB media
22:4822:48, 20 January 2018 diff hist +151‎ Bootable Linux USB stick ‎ →‎initializing the media
22:4522:45, 20 January 2018 diff hist +760‎ Bootable Linux USB stick ‎ →‎types of USB media
22:1922:19, 20 January 2018 diff hist −14‎ Bootable Linux USB stick ‎ →‎fill empty space of all partitions with “zeroes”
22:1422:14, 20 January 2018 diff hist +3,033‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick
19:5419:54, 20 January 2018 diff hist +22‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick

22:4222:42, 17 January 2018 diff hist +78‎ Storage of diffraction data ‎No edit summary current
22:3322:33, 17 January 2018 diff hist +137‎ Storage of diffraction data ‎ →‎Diffraction data storage solution

11:2111:21, 29 December 2017 diff hist +127‎ Cryo ‎ →‎See also current

16:0716:07, 22 December 2017 diff hist −119‎ Phenix ‎No edit summary
16:0316:03, 22 December 2017 diff hist +28‎ Phenix ‎ fix links II
16:0116:01, 22 December 2017 diff hist +290‎ Phenix ‎ update links
15:4715:47, 22 December 2017 diff hist +33‎ Phenix ‎No edit summary
15:4515:45, 22 December 2017 diff hist +1‎ Phenix ‎ →‎phenix.fmodel - calculate structure factors from model

14:2714:27, 18 December 2017 diff hist +296‎ Crystallography ‎ →‎Web services

13:3913:39, 5 December 2017 diff hist −218‎ Stereo ‎ →‎Nvidia 3D Vision 2
13:3813:38, 5 December 2017 diff hist +9‎ Stereo ‎ →‎Nvidia 3D Vision 2
13:2013:20, 5 December 2017 diff hist +53‎ Stereo ‎ →‎Nvidia 3D Vision 2
13:0813:08, 5 December 2017 diff hist +575‎ Stereo ‎ →‎Windows

09:5209:52, 23 November 2017 diff hist −1‎ Bootable Linux USB stick ‎No edit summary

16:5216:52, 22 November 2017 diff hist +38‎ Bootable Linux USB stick ‎No edit summary
16:2716:27, 22 November 2017 diff hist +1‎ Bootable Linux USB stick ‎ →‎adjust the USB-stick for UEFI/EFI boot (before reboot from chroot environment)
16:2616:26, 22 November 2017 diff hist +16‎ Bootable Linux USB stick ‎ →‎install Fedora23 on an UEFI machine (UEFI enabled ; LegacyBoot / CSM disabled)
16:2116:21, 22 November 2017 diff hist +22‎ Bootable Linux USB stick ‎ →‎install Fedora23 on an UEFI machine (UEFI enabled ; LegacyBoot / CSM disabled)

11:5111:51, 21 November 2017 diff hist +108‎ Stereo ‎ →‎Software

10:1810:18, 13 October 2017 diff hist +122‎ SMV file format ‎ add link to A. Arvai's SMV library current

19:3219:32, 7 October 2017 diff hist +198‎ Refinement ‎ →‎Bulk solvent correction produces difference density

11:1811:18, 27 July 2017 diff hist +754‎ Bioinformatics ‎ →‎Docking: Hydrophobic patches current

22:0222:02, 7 July 2017 diff hist +260‎ R-factors ‎ →‎Data quality indicators

23:0923:09, 18 June 2017 diff hist −3,419‎ User talk:MattB ‎ Blanked the page

10:2310:23, 28 May 2017 diff hist +98‎ Phenix ‎ →‎Installation from source, and of Rosetta interface

08:1808:18, 22 May 2017 diff hist −268‎ Phenix ‎ →‎Installation from source, and of Rosetta interface

21:2321:23, 1 May 2017 diff hist −41‎ Programming and programming languages ‎ →‎Learning Fortran: remove dead link current
20:3420:34, 1 May 2017 diff hist +135‎ Programming and programming languages ‎No edit summary

20:0920:09, 30 April 2017 diff hist +89‎ Sharp ‎ →‎Hints for using SHARP current
20:0520:05, 30 April 2017 diff hist +267‎ Sharp ‎ →‎Hints for using SHARP: autoSHARP

13:5313:53, 27 April 2017 diff hist −1‎ Crystallography courses on the web ‎ →‎Movies: fix link current

20:5720:57, 17 February 2017 diff hist +1,230‎ Stereo ‎ →‎Linux

15:1615:16, 2 February 2017 diff hist −1,945‎ Coot ‎ remove some obsolete stuff

10:2010:20, 28 December 2016 diff hist +148‎ SHELX C/D/E ‎ hkl2map

22:2322:23, 28 November 2016 diff hist −48‎ Filesystems ‎ →‎Ext4 current
22:2322:23, 28 November 2016 diff hist −46‎ Filesystems ‎ →‎Ext4
22:2222:22, 28 November 2016 diff hist −202‎ Filesystems ‎ →‎ZFS
22:2122:21, 28 November 2016 diff hist +45‎ Filesystems ‎ →‎XFS

16:0916:09, 21 November 2016 diff hist −17‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick
16:0016:00, 21 November 2016 diff hist +915‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick

14:3014:30, 16 November 2016 diff hist −78‎ Bootable Linux USB stick ‎No edit summary

17:4217:42, 14 November 2016 diff hist +87‎ Bootable Linux USB stick ‎No edit summary
17:0117:01, 14 November 2016 diff hist +247‎ Bootable Linux USB stick ‎No edit summary
12:2712:27, 14 November 2016 diff hist +142‎ Bootable Linux USB stick ‎No edit summary

21:2121:21, 28 September 2016 diff hist +1,751‎ CC1/2 ‎No edit summary

12:0112:01, 26 July 2016 diff hist +564‎ CC1/2 ‎No edit summary

22:0922:09, 20 June 2016 diff hist −25‎ Phenix ‎ →‎Using a reference model: upate syntax

10:3110:31, 29 May 2016 diff hist +13‎ R-factors ‎ →‎what kinds of problems exist with these indicators?
10:2510:25, 29 May 2016 diff hist +361‎ R-factors ‎ →‎what kinds of problems exist with these indicators?

10:1210:12, 12 May 2016 diff hist +90‎ Bootable Linux USB stick ‎ →‎install Fedora23 on an UEFI machine (UEFI enabled ; LegacyBoot / CSM disabled): add binutils RPM

09:2809:28, 23 April 2016 diff hist +59‎ CC1/2 ‎ →‎References
09:2709:27, 23 April 2016 diff hist +762‎ N CC1/2 ‎ Created page with "Examples for citations from papers using (possibly among other criteria) CC<sub>1/2</sub> and/or the paired refinement method (reference below) for finding the high-resolution..."

10:0010:00, 21 April 2016 diff hist +8‎ Test data sets ‎No edit summary current

16:2816:28, 19 April 2016 diff hist +181‎ Bootable Linux USB stick ‎ →‎install Fedora23 on an UEFI machine (UEFI enabled ; LegacyBoot / CSM disabled)

14:1214:12, 9 April 2016 diff hist +151‎ Topology plots ‎No edit summary current

10:3210:32, 30 March 2016 diff hist +1,130‎ Bootable Linux USB stick ‎No edit summary
10:0210:02, 30 March 2016 diff hist +1‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick

15:2515:25, 29 March 2016 diff hist +14‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick
15:1415:14, 29 March 2016 diff hist −486‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick
14:1414:14, 29 March 2016 diff hist +33‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick

10:5410:54, 28 March 2016 diff hist +99‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick
10:5010:50, 28 March 2016 diff hist +91‎ Bootable Linux USB stick ‎ →‎for techies: taking care of the stick

18:2318:23, 25 March 2016 diff hist −229‎ Bootable Linux USB stick ‎No edit summary
18:2118:21, 25 March 2016 diff hist −6‎ Bootable Linux USB stick ‎ →‎generating images and copies of the stick
18:1618:16, 25 March 2016 diff hist +83‎ Bootable Linux USB stick ‎No edit summary
18:1418:14, 25 March 2016 diff hist −244‎ Bootable Linux USB stick ‎No edit summary
17:5917:59, 25 March 2016 diff hist −379‎ Bootable Linux USB stick ‎No edit summary

22:0322:03, 22 March 2016 diff hist −6‎ Bootable Linux USB stick ‎ →‎Install Fedora23 on an UEFI machine (UEFI enabled; LegacyBoot / CSM disabled)
22:0322:03, 22 March 2016 diff hist +13‎ Bootable Linux USB stick ‎ →‎GPT partition the stick using gdisk
21:5921:59, 22 March 2016 diff hist +118‎ Bootable Linux USB stick ‎ →‎Howto create a bootabled GPT-partitioned USB-stick with Fedora 23
18:0018:00, 22 March 2016 diff hist +258‎ Bootable Linux USB stick ‎No edit summary
10:2010:20, 22 March 2016 diff hist +3,621‎ Bootable Linux USB stick ‎ update with complete writeup

00:2000:20, 13 March 2016 diff hist 0‎ Current events ‎No edit summary current
00:2000:20, 13 March 2016 diff hist −2,108‎ Course or Conference 2 ‎ Blanked the page current
00:1900:19, 13 March 2016 diff hist −1,889‎ Course or Conference 1 ‎ Blanked the page current
00:1900:19, 13 March 2016 diff hist +224‎ Current events ‎No edit summary
00:1400:14, 13 March 2016 diff hist +131‎ Bootable Linux USB stick ‎No edit summary
00:0800:08, 13 March 2016 diff hist −33‎ Bootable Linux USB stick ‎ →‎Some more details

18:1018:10, 8 March 2016 diff hist −321‎ CentOS ‎No edit summary current

10:5210:52, 26 October 2015 diff hist −40‎ CentOS ‎ →‎Installation and maintenance of CentOS machines

18:1818:18, 21 October 2015 diff hist −221‎ Filesystems ‎ →‎Ext3: remove
18:1818:18, 21 October 2015 diff hist +39‎ Filesystems ‎ →‎XFS

17:2217:22, 13 October 2015 diff hist +94‎ Phenix ‎ →‎NCS

10:5410:54, 9 September 2015 diff hist +618‎ Crystal growth: Protein-DNA complexes ‎No edit summary current

11:5311:53, 31 July 2015 diff hist +62‎ Main Page ‎No edit summary

08:3808:38, 30 July 2015 diff hist +28‎ Crystals ‎ →‎Crystal Imperfections
08:3708:37, 30 July 2015 diff hist +74‎ N Examples of diffraction patterns ‎ Kay moved page Examples of diffraction patterns to Examples of diffraction patterns showing particular features: makes more sense current
08:3708:37, 30 July 2015 diff hist 0‎ m Examples of diffraction patterns showing particular features ‎ Kay moved page Examples of diffraction patterns to Examples of diffraction patterns showing particular features: makes more sense current

08:1408:14, 29 July 2015 diff hist +43‎ Examples of diffraction patterns showing particular features ‎No edit summary
08:0708:07, 29 July 2015 diff hist +72‎ N File:212490 rescale.jpg ‎ From https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=CCP4BB;38a82a0b.1507 current
08:0608:06, 29 July 2015 diff hist +72‎ N File:212488 rescale.jpg ‎ From https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=CCP4BB;38a82a0b.1507 current
08:0408:04, 29 July 2015 diff hist +81‎ Examples of diffraction patterns showing particular features ‎No edit summary
08:0308:03, 29 July 2015 diff hist +658‎ N Examples of diffraction patterns showing particular features ‎ Created page with " This pattern arises from disorder caused by "frustrated overconstraint". You can find similar pattern in Welberry, T. R., et al. "Diffuse scattering resulting from macromol..."
08:0008:00, 29 July 2015 diff hist +39‎ Crystals ‎ →‎Crystal Imperfections
07:5807:58, 29 July 2015 diff hist +80‎ Basics of Crystallography ‎No edit summary current

22:2022:20, 21 July 2015 diff hist +280‎ Bulk solvent correction ‎No edit summary current

09:3009:30, 11 July 2015 diff hist +1,065‎ Coot ‎ →‎make RSR in coot 0.8.1 behave like in earlier versions: Molprobity not active in COOT

12:1212:12, 25 June 2015 diff hist +23‎ SHELX C/D/E ‎ →‎Obtaining the SHELX programs: update URL
12:0912:09, 25 June 2015 diff hist −265‎ SHELX C/D/E ‎ →‎Obtaining the SHELX programs: remove text about beta
12:0812:08, 25 June 2015 diff hist −5‎ SHELX C/D/E ‎ →‎SAD/MAD with automatic backbone building: no beta version req'd
11:5811:58, 25 June 2015 diff hist −127‎ SHELX C/D/E ‎ →‎Full list of SHELXE options (defaults in brackets)

19:5419:54, 10 June 2015 diff hist +1,160‎ Zalman Stereo ‎ →‎Zalman LCD Stereo current

20:4520:45, 30 May 2015 diff hist +122‎ Phenix ‎ →‎advanced usage

14:4614:46, 29 May 2015 diff hist −122‎ Phenix ‎ →‎phaser.brunett

10:1710:17, 29 April 2015 diff hist −65‎ Phenix ‎ →‎phenix.polygon

12:2712:27, 22 April 2015 diff hist +76‎ Phenix ‎ →‎Atom selection

10:5010:50, 4 April 2015 diff hist +328‎ Stereo ‎ →‎Nvidia 3D Vision 2

22:2922:29, 1 April 2015 diff hist −128‎ Stereo ‎ →‎Nvidia 3D Vision 2

21:4121:41, 31 March 2015 diff hist +64‎ Stereo ‎ →‎Nvidia 3D Vision 2

12:5812:58, 29 March 2015 diff hist +1,072‎ Coot ‎ →‎NCS Rotamer differences

00:1000:10, 26 March 2015 diff hist −172‎ Stereo ‎ →‎Nvidia 3D Vision 2

10:5210:52, 25 March 2015 diff hist +32‎ Stereo ‎ →‎Nvidia 3D Vision 2

16:4216:42, 24 March 2015 diff hist −6‎ Stereo ‎ →‎Nvidia 3D Vision 2
16:3816:38, 24 March 2015 diff hist +140‎ Stereo ‎ →‎Nvidia 3D Vision 2
16:2716:27, 24 March 2015 diff hist +38‎ Stereo ‎ →‎Nvidia 3D Vision 2
16:2216:22, 24 March 2015 diff hist +14‎ Stereo ‎ →‎Nvidia 3D Vision 2
16:1816:18, 24 March 2015 diff hist +325‎ Stereo ‎No edit summary

09:5209:52, 19 March 2015 diff hist +75‎ Phenix ‎ →‎Installation from source, and of Rosetta interface

20:5320:53, 18 March 2015 diff hist +1,841‎ Phenix ‎ Installation from source, and of Rosetta interface
12:2012:20, 18 March 2015 diff hist −10‎ R-factors ‎ →‎what kinds of problems exist with these indicators?: fix link

12:4812:48, 24 January 2015 diff hist +1,538‎ Phenix ‎ →‎Crystallographic data

05:0205:02, 21 January 2015 diff hist −44‎ Stereo ‎ →‎See also
04:5904:59, 21 January 2015 diff hist +20‎ Stereo ‎No edit summary
03:3103:31, 21 January 2015 diff hist −1,678‎ Stereo ‎No edit summary
03:2503:25, 21 January 2015 diff hist +2‎ Stereo ‎ →‎See also
03:2503:25, 21 January 2015 diff hist +27‎ N Coot zalman ‎ Kay moved page Coot zalman to Zalman Stereo: more fitting current
03:2503:25, 21 January 2015 diff hist 0‎ m Zalman Stereo ‎ Kay moved page Coot zalman to Zalman Stereo: more fitting
03:2403:24, 21 January 2015 diff hist −9‎ Zalman Stereo ‎No edit summary

12:3112:31, 20 January 2015 diff hist +7‎ Stereo ‎No edit summary
11:4111:41, 20 January 2015 diff hist +38‎ Stereo ‎ →‎Status January 2015
11:4011:40, 20 January 2015 diff hist −45‎ Stereo ‎ →‎Nvidia 3D Vision 2
11:3511:35, 20 January 2015 diff hist +178‎ Stereo ‎ →‎TFT monitors: update January 2015
11:2211:22, 20 January 2015 diff hist +4‎ Stereo ‎ →‎Nvidia 3D Vision 2
11:0511:05, 20 January 2015 diff hist 0‎ Stereo ‎ →‎Nvidia 3D Vision
11:0411:04, 20 January 2015 diff hist +358‎ Stereo ‎ →‎Nvidia 3D Vision
10:4910:49, 20 January 2015 diff hist −1,049‎ Stereo ‎No edit summary
10:2310:23, 20 January 2015 diff hist +62‎ Stereo ‎ →‎TFT monitors: update January 2015
09:5509:55, 20 January 2015 diff hist −728‎ Zalman Stereo ‎ →‎Some Potentially Useful Scripts and Tweaks
09:5409:54, 20 January 2015 diff hist −481‎ Zalman Stereo ‎ →‎Customized Menu for Zalman Monitor
09:5309:53, 20 January 2015 diff hist −679‎ Zalman Stereo ‎ →‎Invoking Zalman Stereo mode in COOT
09:5209:52, 20 January 2015 diff hist −363‎ Zalman Stereo ‎ →‎Customized Key Bindings to Toggle Stereo on and Off
09:5209:52, 20 January 2015 diff hist −136‎ Zalman Stereo ‎ →‎Inverted Stereo?
09:2809:28, 20 January 2015 diff hist +869‎ Stereo ‎ Stereo in 2015

05:0205:02, 18 January 2015 diff hist +195‎ Phenix ‎ →‎phenix.pbdtools - PDB model manipulations and statistics
04:5604:56, 18 January 2015 diff hist +176‎ Phenix ‎ →‎Atom selection

04:4004:40, 17 January 2015 diff hist +145‎ Twinning ‎ →‎Twinning by Reticular Merohedry

11:2311:23, 18 December 2014 diff hist +17‎ Create an account ‎No edit summary current

12:1712:17, 10 December 2014 diff hist +10‎ Phenix ‎ →‎phenix.fmodel - calculate structure factors from model
11:1411:14, 10 December 2014 diff hist +40‎ Phenix ‎ →‎NCS

23:2423:24, 31 October 2014 diff hist −163‎ Main Page ‎ →‎How to use this wiki: prove you're a human

13:2413:24, 14 October 2014 diff hist −5‎ R-factors ‎ →‎what kinds of problems exist with these indicators?
13:2313:23, 14 October 2014 diff hist +2‎ R-factors ‎ →‎measuring quality of averaged intensities/amplitudes
12:2912:29, 14 October 2014 diff hist −10‎ R-factors ‎ →‎Model quality indicators
12:2712:27, 14 October 2014 diff hist −52‎ R-factors ‎ R_scale
12:2112:21, 14 October 2014 diff hist +49‎ R-factors ‎ →‎Comparing two sets of structure factor amplitudes or intensities
11:0311:03, 14 October 2014 diff hist +291‎ R-factors ‎ →‎measuring quality of averaged intensities/amplitudes
09:5009:50, 14 October 2014 diff hist +4‎ R-factors ‎No edit summary
09:4709:47, 14 October 2014 diff hist +165‎ R-factors ‎No edit summary

18:1718:17, 6 October 2014 diff hist +144‎ Finding symmetry elements in P1 ‎No edit summary

14:5814:58, 27 July 2014 diff hist +146‎ Crystals ‎ →‎Crystal Growth

12:1612:16, 7 May 2014 diff hist +341‎ Coot ‎ →‎NCS edits

10:2910:29, 3 May 2014 diff hist +76‎ CIF files ‎ →‎Use the Grade server
09:3409:34, 3 May 2014 diff hist +51‎ CIF files ‎ →‎Use the PRODRG server
09:3109:31, 3 May 2014 diff hist +1,026‎ N CIF files ‎ Created page with "CIF files are needed for refinement (e.g. refmac, phenix.refine, buster) and visualization programs (e.g. coot) to describe the topology and parameters of liga..."

18:0618:06, 18 April 2014 diff hist +56‎ Refinement ‎ →‎Bulk solvent correction produces difference density

13:0313:03, 4 April 2014 diff hist −183‎ SHELX C/D/E ‎ →‎Cubic space groups (PATS vs WEED): remove paragraph - WEED is no longer necessary in latest SHELXE
11:3511:35, 4 April 2014 diff hist +766‎ SHELX C/D/E ‎ →‎critical parameters: re-organize

14:3314:33, 31 March 2014 diff hist −111‎ Coot ‎ update URLs at top of article

23:4223:42, 26 March 2014 diff hist +44‎ SHELX C/D/E ‎ →‎critical parameters: reason to use MIND -3.5

12:0912:09, 21 March 2014 diff hist −195‎ Phenix ‎ →‎phenix.phaser - SAD phasing with Phaser

12:2112:21, 19 March 2014 diff hist +396‎ SHELX C/D/E ‎ →‎critical parameters

09:0109:01, 18 March 2014 diff hist −6‎ Hkl2map ‎ update download site current
08:5508:55, 18 March 2014 diff hist −20‎ m SHELX C/D/E ‎ →‎SHELXC: remove duplicate SPAG

15:0215:02, 10 March 2014 diff hist +14,444‎ Phenix ‎ new: List of programs

15:3015:30, 5 March 2014 diff hist +144‎ SHELX C/D/E ‎No edit summary
15:2515:25, 5 March 2014 diff hist 0‎ SHELX C/D/E ‎ →‎how to find out if a molecular replacement solution is correct or wrong
15:2415:24, 5 March 2014 diff hist −4‎ SHELX C/D/E ‎ →‎The free lunch algorithm (FLA): no longer new
15:2315:23, 5 March 2014 diff hist +264‎ SHELX C/D/E ‎ →‎RIP with SHELXC/D/E
15:2215:22, 5 March 2014 diff hist −279‎ SHELX C/D/E ‎ remove
15:2115:21, 5 March 2014 diff hist +165‎ SHELX C/D/E ‎ →‎Phasing and density modification
15:2015:20, 5 March 2014 diff hist −1,051‎ SHELX C/D/E ‎ RIP
15:1815:18, 5 March 2014 diff hist +3,550‎ SHELX C/D/E ‎ usage notes and options as written out by SHELXE Version 2014/1
14:3414:34, 5 March 2014 diff hist +1,355‎ SHELX C/D/E ‎ shelxc: insert usage notes as written out by the program
12:0912:09, 5 March 2014 diff hist +32‎ SHELX C/D/E ‎ →‎SHELXC: xds files are also read

22:4322:43, 2 February 2014 diff hist +282‎ R-factors ‎ →‎what kinds of problems exist with these indicators?

12:5312:53, 23 January 2014 diff hist +286‎ Coot ‎ →‎Zalman Stereo

13:0813:08, 11 January 2014 diff hist +42‎ Phenix ‎ →‎phenix.explore_metric_symmetry - investigate different settings: link to othercell doc

11:4411:44, 22 November 2013 diff hist +329‎ Stereo ‎ →‎Stereo on TFT monitors
11:3611:36, 22 November 2013 diff hist +579‎ Stereo ‎ →‎Stereo on TFT monitors

11:2911:29, 11 November 2013 diff hist +368‎ Properties of proteins ‎ →‎Distinguishing ions from waters
11:1911:19, 11 November 2013 diff hist −53‎ Properties of proteins ‎ →‎Melting point

15:1515:15, 31 October 2013 diff hist +235‎ Twinning ‎ →‎Refinement

16:4316:43, 11 September 2013 diff hist +620‎ Stereo ‎ →‎Stereo on TFT monitors

21:3821:38, 1 May 2013 diff hist +340‎ Phenix ‎ →‎Validation

23:2823:28, 12 March 2013 diff hist −68‎ Topology plots ‎No edit summary
23:2523:25, 12 March 2013 diff hist +515‎ N Topology plots ‎ collect results from thread https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ccp4bb;950acc9c.1303
23:1423:14, 12 March 2013 diff hist +21‎ Bioinformatics ‎ →‎Structure only: topology plots

02:2802:28, 17 February 2013 diff hist +100‎ Phenix ‎ →‎TLS

20:2020:20, 20 January 2013 diff hist +30‎ Centric and acentric reflections ‎ →‎Reciprocal space

12:1912:19, 14 January 2013 diff hist +9‎ SHELX C/D/E ‎ →‎notes about the beta-test version of SHELXE
12:1712:17, 14 January 2013 diff hist +143‎ SHELX C/D/E ‎ →‎notes about the beta-test version of SHELXE

12:5112:51, 18 November 2012 diff hist +272‎ Phenix ‎ phenix.pdb_atom_selection

11:2211:22, 14 November 2012 diff hist +131‎ Solve a small-molecule structure ‎ →‎assigning chemical types

13:1813:18, 13 November 2012 diff hist +472‎ Solve a small-molecule structure ‎ →‎assigning chemical types
13:0413:04, 13 November 2012 diff hist +6‎ Solve a small-molecule structure ‎ →‎use POINTLESS to find possible spacegroups
13:0213:02, 13 November 2012 diff hist −318‎ Solve a small-molecule structure ‎ →‎use XPREP to find possible spacegroups

15:1615:16, 3 August 2012 diff hist +385‎ Phenix ‎ →‎An experimental feature currently being worked on

08:2508:25, 5 July 2012 diff hist +534‎ Phenix ‎ →‎TLS
08:2508:25, 5 July 2012 diff hist −195‎ Phenix ‎ →‎advanced usage

22:0022:00, 15 June 2012 diff hist +269‎ R-factors ‎ →‎what kinds of problems exist with these indicators?

10:3410:34, 7 June 2012 diff hist +157‎ R-factors ‎ →‎what kinds of problems exist with these indicators?: include table from Murshudov paper

08:5708:57, 25 May 2012 diff hist +450‎ Coot ‎ reading MTZ file with experimental PHI and FOM using --auto

09:3209:32, 23 May 2012 diff hist +510‎ N Crystallographic data file formats ‎ Created page with " == MAR == A MarCCD file is a TIFF image. The first 4096 bytes contain the header in a simple format, where the crystallographically interesting stuff starts after byte 1024...." current
09:2809:28, 23 May 2012 diff hist +57‎ SMV file format ‎No edit summary

21:4321:43, 14 May 2012 diff hist +186‎ Twinning ‎ →‎Refinement

08:2208:22, 7 May 2012 diff hist +337‎ Coot ‎ →‎SHELXL

09:3109:31, 5 May 2012 diff hist +866‎ Properties of proteins ‎ CSO CSX

21:3521:35, 3 May 2012 diff hist +247‎ Phenix ‎ phenix.ksdssp

17:5417:54, 16 April 2012 diff hist +11‎ Phenix ‎ →‎advanced usage: new nomenclature: optimize_xyz_weight=true optimize_adp_weight=true

13:4513:45, 30 March 2012 diff hist +56‎ Coot ‎ →‎Example: installing a 64bit nightly CentOS5 binary build on 64bit SL6.1: fix typo

10:4510:45, 24 March 2012 diff hist +1,684‎ Pseudo-translation ‎No edit summary current
10:3110:31, 24 March 2012 diff hist +641‎ N Pseudo-translation ‎ Created page with "* R-values of a structure with pseudo-translation are higher than usual, e.g. starting R values after molecular replacement could be 70-80%. == Solving the structure == # obt..."
10:2410:24, 24 March 2012 diff hist +24‎ Intensity statistics ‎No edit summary current
10:2310:23, 24 March 2012 diff hist +4‎ R-factors ‎ →‎what kinds of problems exist with these indicators?

10:3310:33, 23 March 2012 diff hist +67‎ Phenix ‎ →‎phenix.clashscore

16:5716:57, 21 March 2012 diff hist +174‎ Phenix ‎ →‎phenix.apply_ncs - applying NCS to a molecule to generate all NCS copies

09:1609:16, 20 March 2012 diff hist +132‎ Phenix ‎ →‎NCS

13:1113:11, 16 March 2012 diff hist +499‎ Coot ‎ building loops

09:3609:36, 13 March 2012 diff hist +655‎ N Solvent content ‎ Created page with "Solvent content can be calculated with the CCP4 program matthews_coef, or with a [http://www.ruppweb.org/Mattprob/ Web server]. Usual values are around 50%, but the range is f..." current
09:2309:23, 13 March 2012 diff hist +21‎ Crystals ‎ solvent content

17:1117:11, 11 March 2012 diff hist +185‎ R-factors ‎ →‎what kinds of problems exist with these indicators?

17:5017:50, 4 March 2012 diff hist −24‎ CentOS ‎No edit summary
17:5017:50, 4 March 2012 diff hist +327‎ CentOS ‎No edit summary
17:4117:41, 4 March 2012 diff hist +333‎ CentOS ‎No edit summary

09:4909:49, 3 March 2012 diff hist +252‎ R-factors ‎ →‎what kinds of problems exist with these indicators?

20:4720:47, 11 February 2012 diff hist +361‎ Coot ‎ →‎Example: installing a 64bit nightly CentOS5 binary build on 64bit SL6.1
20:3920:39, 11 February 2012 diff hist −6,076‎ Coot ‎ shorter and more accurate
13:1813:18, 11 February 2012 diff hist +105‎ Coot ‎ →‎Example: installing a 64bit nightly CentOS5 binary build on 64bit SL6.1
13:1513:15, 11 February 2012 diff hist +1,909‎ Coot ‎ →‎Example: installing coot-0.7-pre-1-revision-3999-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz on 64bit SL6.1
12:1312:13, 11 February 2012 diff hist +6,859‎ Coot ‎ →‎Installation from a distributed binary tarball package

22:1322:13, 26 January 2012 diff hist +2,041‎ Phenix ‎ →‎Low resolution refinement
22:0522:05, 26 January 2012 diff hist +250‎ Programming and programming languages ‎ →‎Learning Python
15:2915:29, 26 January 2012 diff hist −1‎ SHELX C/D/E ‎ →‎SAD/MAD with automatic backbone building

14:1914:19, 21 January 2012 diff hist +730‎ N Ligand display ‎ Created page with "* [http://www.ebi.ac.uk/thornton-srv/software/LIGPLOT/ Ligplot] - You don't need any skills to use Ligplot. Only thing you have to give is the "residue number" of the ligand or ..." current
14:1414:14, 21 January 2012 diff hist +21‎ Bioinformatics ‎ →‎Structure only

09:5509:55, 12 January 2012 diff hist +75‎ Experimental phasing ‎ →‎Heavy atoms and their properties current

21:2221:22, 14 December 2011 diff hist −12‎ Properties of proteins ‎ →‎Ideal metal bond distances

22:1222:12, 1 December 2011 diff hist +587‎ N Solving a structure: Tips and Tricks ‎ Created page with "One possible way of improving "weak density" is to improve the model as much as you can: make sure you modeled all alternative conformations, all solvent, etc. * B-factor sharpen..." current
22:0322:03, 1 December 2011 diff hist +241‎ Main Page ‎ →‎News
22:0222:02, 1 December 2011 diff hist −105‎ Main Page ‎ →‎How to use this wiki
14:4114:41, 1 December 2011 diff hist +230‎ Solve a small-molecule structure ‎ →‎Electron density

16:2516:25, 11 November 2011 diff hist +170‎ Phenix ‎ →‎Validation: phenix.r_factor_statistics

10:4010:40, 8 November 2011 diff hist +883‎ Solve a small-molecule structure ‎ →‎Solve the structure with SHELXD: add GS posting

10:4910:49, 5 November 2011 diff hist +10‎ SHELX C/D/E ‎ →‎how to prove that a molecular replacement solution is correct
10:4910:49, 5 November 2011 diff hist +1,531‎ SHELX C/D/E ‎ →‎notes about the beta-test version of SHELXE

08:1808:18, 22 October 2011 diff hist +217‎ Improving crystal quality ‎ →‎Working with poor quality crystals: reference current

10:2210:22, 9 October 2011 diff hist +153‎ m Phenix ‎ →‎Atom selection: add example

21:0621:06, 1 October 2011 diff hist +4‎ Centric and acentric reflections ‎ →‎Reciprocal space
21:0521:05, 1 October 2011 diff hist +201‎ Centric and acentric reflections ‎ →‎References
21:0321:03, 1 October 2011 diff hist 0‎ Centric and acentric reflections ‎ →‎Reciprocal space

21:2121:21, 27 September 2011 diff hist +1‎ m Main Page ‎ →‎How to use this wiki: type
21:2021:20, 27 September 2011 diff hist +100‎ Main Page ‎ →‎How to use this wiki
08:4908:49, 27 September 2011 diff hist +683‎ Phenix ‎ →‎An experimental feature currently being worked on
08:2208:22, 27 September 2011 diff hist +14‎ Phenix ‎ →‎phenix.grow_density - local density improvement

13:4913:49, 24 September 2011 diff hist +88‎ SHELX C/D/E ‎ →‎SHELXC
13:4613:46, 24 September 2011 diff hist +497‎ SHELX C/D/E ‎ →‎Obtaining the SHELX programs
13:0913:09, 24 September 2011 diff hist 0‎ SHELX C/D/E ‎ →‎Obtaining the SHELX programs

09:2609:26, 14 September 2011 diff hist +48‎ Refinement ‎ →‎Programs

10:3910:39, 12 September 2011 diff hist +186‎ Visualization: graphics cards and 3D ‎ →‎Hybrid graphics current
10:3710:37, 12 September 2011 diff hist +676‎ Visualization: graphics cards and 3D ‎ →‎maintaining the NVidia driver

14:5814:58, 8 September 2011 diff hist +64‎ Main Page ‎ →‎What is CCP4?

10:0310:03, 1 September 2011 diff hist +655‎ Phenix ‎ →‎phenix.model_vs_data - statistics

09:3409:34, 30 August 2011 diff hist +270‎ Molecular replacement ‎ →‎Self-rotation function current

20:4720:47, 11 August 2011 diff hist +520‎ Phenix ‎ →‎phenix.grow_density - local density improvement

21:4821:48, 7 August 2011 diff hist +17‎ Phenix ‎ →‎Using a reference model
19:5019:50, 7 August 2011 diff hist +513‎ Phenix ‎ →‎Fix His/Asn/Gln sidechain orientations

08:3508:35, 6 August 2011 diff hist +243‎ Phenix ‎ →‎phenix.tls - tool to convert between total and residual ADPs

21:2521:25, 22 July 2011 diff hist +122‎ Phenix ‎ →‎phenix.automr - interface to Phaser and Resolve: brunett
19:5819:58, 22 July 2011 diff hist +194‎ Phenix ‎ →‎phenix.find_tls_groups: data_viewer

21:0121:01, 11 July 2011 diff hist +113‎ Phenix ‎ →‎phenix.apply_ncs - applying NCS to a molecule to generate all NCS copies
21:0021:00, 11 July 2011 diff hist +119‎ Phenix ‎ →‎phenix.find_ncs - identification of NCS operators
14:4714:47, 11 July 2011 diff hist +142‎ Main Page ‎ →‎How to use this wiki

19:2419:24, 10 June 2011 diff hist +53‎ Bioinformatics ‎ →‎Docking

17:0917:09, 1 June 2011 diff hist +105‎ Phenix ‎ →‎TLS

18:4118:41, 29 May 2011 diff hist +119‎ Structural superposition ‎No edit summary current
18:3218:32, 29 May 2011 diff hist +98‎ Structural superposition ‎No edit summary

08:2408:24, 27 May 2011 diff hist +700‎ Refinement ‎ →‎Bulk solvent correction produces difference density

09:3809:38, 19 May 2011 diff hist +745‎ Phenix ‎ →‎phenix.mtz2map

21:5121:51, 16 May 2011 diff hist +191‎ Twinning ‎ →‎Solution

17:1817:18, 14 May 2011 diff hist +314‎ Twinning ‎No edit summary
17:0717:07, 14 May 2011 diff hist +95‎ Twinning ‎ →‎Twinning by Merohedry

12:4212:42, 10 May 2011 diff hist +344‎ Prediction of structure from sequence: servers and programs ‎ →‎3D prediction current

12:1912:19, 2 May 2011 diff hist +493‎ Phenix ‎ →‎phenix.phaser

18:5618:56, 1 May 2011 diff hist +2,587‎ Phenix ‎ →‎phenix.autosol - experimental phasing "wizard"

10:5610:56, 15 April 2011 diff hist +704‎ Structural superposition ‎No edit summary
08:5108:51, 15 April 2011 diff hist +38‎ N Superimposing Molecules ‎ moved Superimposing Molecules to Structural superposition: seems better current
08:5108:51, 15 April 2011 diff hist 0‎ m Structural superposition ‎ moved Superimposing Molecules to Structural superposition: seems better
08:5008:50, 15 April 2011 diff hist +88‎ Bioinformatics ‎ →‎Structure only
08:4708:47, 15 April 2011 diff hist +588‎ N Structural superposition ‎ Created page with "# MatchMaker - http://www.cgl.ucsf.edu/chimera/current/docs/ContributedSoftware/matchmaker/matchmaker.html which is part of Chimera http://www.cgl.ucsf.edu/chimera # O # lsqman ..."

09:0709:07, 7 April 2011 diff hist +109‎ Phenix ‎ →‎An experimental feature currently being worked on
09:0409:04, 7 April 2011 diff hist +202‎ Phenix ‎ →‎Switching off specific interactions
08:3208:32, 7 April 2011 diff hist 0‎ File:Cxc-motif.jpg ‎ uploaded a new version of "File:Cxc-motif.jpg" current
08:3108:31, 7 April 2011 diff hist +63‎ Structural motifs in the PDB ‎No edit summary current
08:3008:30, 7 April 2011 diff hist −27‎ Structural motifs in the PDB ‎No edit summary
08:2608:26, 7 April 2011 diff hist 0‎ N File:Cxc-motif.jpg ‎No edit summary

22:0122:01, 6 April 2011 diff hist +2,484‎ N Structural motifs in the PDB ‎ Created page with "'''Question''': Has anyone see a disulfide forming between the two cys of "CXC" in the middle of a loop, and create a sharp turn, where X is not a proline? I seems to me that geo..."
21:5421:54, 6 April 2011 diff hist +35‎ Bioinformatics ‎ →‎Structure to Sequence
08:4708:47, 6 April 2011 diff hist +1,228‎ Data collection: Tips and Tricks ‎No edit summary current

15:5015:50, 22 March 2011 diff hist +80‎ SHELX C/D/E ‎ →‎Phasing and density modification

10:5110:51, 9 March 2011 diff hist +27‎ Bioinformatics ‎ →‎Structure only
10:4810:48, 9 March 2011 diff hist +184‎ Morph with Chimera ‎No edit summary current

10:2210:22, 7 March 2011 diff hist +565‎ Solve a small-molecule structure ‎ →‎Finishing the structure

21:3221:32, 1 March 2011 diff hist +437‎ Solve a small-molecule structure ‎No edit summary
17:2817:28, 1 March 2011 diff hist +39‎ Solve a small-molecule structure ‎ →‎use XPREP to find possible spacegroups
16:2816:28, 1 March 2011 diff hist +565‎ Solve a small-molecule structure ‎No edit summary
16:1816:18, 1 March 2011 diff hist +3,027‎ Solve a small-molecule structure ‎No edit summary
15:4115:41, 1 March 2011 diff hist +57‎ Solve a small-molecule structure ‎ →‎assigning chemical types
15:3215:32, 1 March 2011 diff hist −1,335‎ Solve a small-molecule structure ‎No edit summary
13:1113:11, 1 March 2011 diff hist +121‎ Solve a small-molecule structure ‎ →‎reduce the data with your favourite data processing software
13:0813:08, 1 March 2011 diff hist +284‎ Solve a small-molecule structure ‎ →‎Finishing the structure
13:0413:04, 1 March 2011 diff hist 0‎ N File:Diffden.png ‎No edit summary current
12:4312:43, 1 March 2011 diff hist +210‎ Zalman Stereo ‎ →‎Inverted Stereo?

23:1823:18, 28 February 2011 diff hist +442‎ Solve a small-molecule structure ‎No edit summary
23:0623:06, 28 February 2011 diff hist +1,611‎ Solve a small-molecule structure ‎No edit summary
22:5222:52, 28 February 2011 diff hist +2,097‎ Solve a small-molecule structure ‎No edit summary
21:0221:02, 28 February 2011 diff hist +5,533‎ N Solve a small-molecule structure ‎ Created page with "The following is based on the experience of a protein crystallographer who one day obtained a small-molecule dataset and managed to solve and refine it without prior knowledge wh..."
19:2419:24, 28 February 2011 diff hist −2‎ Crystallography ‎No edit summary
19:2219:22, 28 February 2011 diff hist +59‎ Crystallography ‎No edit summary
12:1712:17, 28 February 2011 diff hist +152‎ Zalman Stereo ‎ →‎Inverted Stereo?

10:4810:48, 25 February 2011 diff hist +126‎ Phenix ‎ →‎phenix.model_vs_data - statistics

23:5623:56, 12 February 2011 diff hist +37‎ Phenix ‎ →‎phenix.explore_metric_symmetry - investigate different settings

21:4621:46, 2 February 2011 diff hist +85‎ Crystals ‎ →‎References

15:1215:12, 26 January 2011 diff hist +197‎ SHELX C/D/E ‎ →‎SAD

09:4109:41, 22 January 2011 diff hist +714‎ Synchrotrons ‎No edit summary

17:3917:39, 9 January 2011 diff hist +70‎ Phenix ‎No edit summary
17:3717:37, 9 January 2011 diff hist +119‎ Phenix ‎ →‎phenix.grow_density - local density improvement

13:3713:37, 5 January 2011 diff hist +56‎ Phenix ‎ →‎phenix.real_space_correlation - compute correlation between two maps
13:3513:35, 5 January 2011 diff hist +128‎ Phenix ‎ →‎phenix.model_vs_data - statistics

14:4714:47, 29 December 2010 diff hist +1,781‎ CNS ‎No edit summary current

23:2223:22, 21 December 2010 diff hist +164‎ Phenix ‎ →‎Crystallographic data
23:1923:19, 21 December 2010 diff hist +361‎ Phenix ‎ →‎See also

11:4711:47, 11 December 2010 diff hist +59‎ Crystallography ‎ →‎Web services
11:3911:39, 11 December 2010 diff hist +259‎ Crystallography ‎ →‎Web services

13:0313:03, 8 December 2010 diff hist 0‎ Phenix ‎ →‎Switching off specific interactions
12:2412:24, 8 December 2010 diff hist +206‎ Phenix ‎ →‎Switching off specific interactions

22:2322:23, 5 December 2010 diff hist +548‎ Phenix ‎ →‎Low resolution refinement

17:3317:33, 3 December 2010 diff hist +303‎ Phenix ‎ add phenix.pdb_interpretation

21:2621:26, 25 November 2010 diff hist −55‎ Main Page ‎ Undo revision 1799 by Donaldbanks (Talk)
09:5609:56, 25 November 2010 diff hist +406‎ Phenix ‎ →‎phenix.superpose_ligands - Superposition of ligands

10:4410:44, 16 November 2010 diff hist +149‎ Mmdb ‎ →‎Example: a typical problem and its solution with mmdb

12:2912:29, 14 November 2010 diff hist +153‎ Phenix ‎No edit summary
12:0012:00, 14 November 2010 diff hist +1,333‎ Phenix ‎ →‎Switching off specific interactions

10:3810:38, 4 November 2010 diff hist +1,208‎ Solvent-accessible surface ‎No edit summary current

17:4817:48, 3 November 2010 diff hist +481‎ N Solvent-accessible surface ‎ Created page with '* the CCP4 program "surface" writes a list of accessible are per atom per residue * the CCP4 program "areaimol" in its latest versions has an option of showing the fraction of ac…'
17:0417:04, 3 November 2010 diff hist +33‎ Bioinformatics ‎ →‎Structure only
16:5016:50, 3 November 2010 diff hist +461‎ Calculate average I/sigma from .sca file ‎No edit summary

11:2311:23, 30 October 2010 diff hist +24‎ Crystallography ‎ →‎Teaching crystallography
10:3610:36, 30 October 2010 diff hist +39‎ N Incommensurate Lattices ‎ moved Incommensurate Lattices to Incommensurate Modulation current
10:3610:36, 30 October 2010 diff hist 0‎ m Incommensurate Modulation ‎ moved Incommensurate Lattices to Incommensurate Modulation current
10:3610:36, 30 October 2010 diff hist +362‎ Lattice Pathologies ‎No edit summary current
10:3010:30, 30 October 2010 diff hist +33‎ N Disorder ‎ moved Disorder to Lattice Pathologies current
10:3010:30, 30 October 2010 diff hist 0‎ m Lattice Pathologies ‎ moved Disorder to Lattice Pathologies
10:2810:28, 30 October 2010 diff hist +355‎ Incommensurate Modulation ‎No edit summary
10:1310:13, 30 October 2010 diff hist +253‎ Crystallography books ‎No edit summary current

20:0720:07, 27 October 2010 diff hist +71‎ Zalman Stereo ‎ →‎Zalman LCD Stereo for COOT

12:4612:46, 23 October 2010 diff hist +534‎ Bulk solvent correction ‎No edit summary

13:4813:48, 18 October 2010 diff hist +621‎ N Lattice Pathologies ‎ Created page with '== lattice-translocation disorder == An intermediate type of disorder with partially coherent interference between crystal domains related by non-lattice translations. A recent …'
09:3109:31, 18 October 2010 diff hist +15‎ Crystallography ‎ →‎Crystallographic Theory

14:1214:12, 13 October 2010 diff hist +1‎ Comparison of home source and synchrotron properties ‎No edit summary current
14:1014:10, 13 October 2010 diff hist +4,617‎ N Comparison of home source and synchrotron properties ‎ Created page with ''''This is James Holton's explanation - too good to be buried in the CCP4BB archives:''' ''Date: Tue, 12 Oct 2010 09:04:05 -0700'' ''From: James Holton <jmholton@LBL.GOV>'' ''…'
14:0614:06, 13 October 2010 diff hist +59‎ Crystals ‎ →‎Data collection

10:1210:12, 5 October 2010 diff hist +2,043‎ Strategies ‎ order of MAD wavelengths current

19:0419:04, 24 September 2010 diff hist +897‎ Properties of proteins ‎ →‎Melting point
18:1718:17, 24 September 2010 diff hist +467‎ Properties of proteins ‎ →‎Melting point
18:1118:11, 24 September 2010 diff hist +444‎ Properties of proteins ‎No edit summary
13:0613:06, 24 September 2010 diff hist +198‎ Phase problem ‎ →‎Experimental phasing
12:5712:57, 24 September 2010 diff hist +223‎ Experimental phasing ‎No edit summary

14:4614:46, 22 September 2010 diff hist +3‎ Structure based sequence alignment ‎No edit summary current
14:4414:44, 22 September 2010 diff hist +201‎ Phenix ‎ →‎phenix.phaser

09:3109:31, 11 September 2010 diff hist +474‎ N Microseeding ‎ Created page with '[http://dx.doi.org/10.1107/S0907444910026041 Acta Cryst. (2010). D66, 927-933] (free access) Promoting crystallization of antibody-antigen complexes via microseed matrix screenin…' current
09:2909:29, 11 September 2010 diff hist +19‎ Crystals ‎ →‎Crystal handling
09:2709:27, 11 September 2010 diff hist +183‎ Cryo ‎ →‎See also

21:0721:07, 8 September 2010 diff hist +267‎ Phenix ‎ →‎phenix.model_vs_data - statistics

22:2722:27, 7 September 2010 diff hist +172‎ Phenix ‎ →‎See also

22:1122:11, 4 September 2010 diff hist +567‎ Phenix ‎ →‎Occupancy
20:2520:25, 4 September 2010 diff hist +185‎ Bioinformatics ‎ →‎Domain definition
20:2420:24, 4 September 2010 diff hist +857‎ Bioinformatics ‎ →‎Structure only: domains
20:1520:15, 4 September 2010 diff hist +18‎ Phenix ‎ →‎phenix.superpose_ligands - Superposition of ligands
19:1019:10, 4 September 2010 diff hist +54‎ Mmdb ‎ →‎Documentation
19:0919:09, 4 September 2010 diff hist +101‎ Mmdb ‎ →‎Example: a typical problem and its solution with mmdb
16:2016:20, 4 September 2010 diff hist +109‎ Phenix ‎ →‎Model analysis and manipulation: add phenix.superpose_ligands

21:4221:42, 29 August 2010 diff hist +5,392‎ N Params.eff ‎ from http://phenix-online.org/pipermail/phenixbb/attachments/20100829/b33b8c0e/attachment-0001.obj current
21:4021:40, 29 August 2010 diff hist +404‎ Phenix ‎ →‎phenix.automr - interface to Phaser and Resolve: add phenix.phaser

10:0810:08, 28 August 2010 diff hist +11‎ Phenix ‎No edit summary
10:0310:03, 28 August 2010 diff hist +357‎ Phenix ‎ →‎Atom selection

16:3016:30, 27 August 2010 diff hist −76‎ Phenix ‎ →‎phenix.phase_and_build and phenix.build_one_model - fast autobuild
16:2116:21, 27 August 2010 diff hist +91‎ Phenix ‎No edit summary
10:2310:23, 27 August 2010 diff hist +111‎ Phenix ‎ →‎Crystallographic data
09:5609:56, 27 August 2010 diff hist +284‎ Phenix ‎ →‎Atom selection: real-space refinement
09:5409:54, 27 August 2010 diff hist +260‎ Model Evaluation ‎ more details for ligplot according to ccp4bb posts current

20:0620:06, 18 August 2010 diff hist +2‎ Phenix ‎No edit summary
20:0120:01, 18 August 2010 diff hist −124‎ Phenix ‎No edit summary
11:3511:35, 18 August 2010 diff hist +62‎ Phenix ‎ re-organization

16:2116:21, 17 August 2010 diff hist +30‎ Crystallography courses on the web ‎ update Rhodes links

14:5714:57, 15 August 2010 diff hist +1,039‎ Phenix ‎No edit summary
13:2613:26, 15 August 2010 diff hist +2,319‎ Phenix ‎ completion and re-organization of first part of article
12:2612:26, 15 August 2010 diff hist +431‎ Bioinformatics ‎ →‎Other stuff: propka
12:1912:19, 15 August 2010 diff hist +294‎ Servers for ligand topologies/parameters ‎No edit summary
11:5311:53, 15 August 2010 diff hist +249‎ Crystallography ‎ →‎Software Packages

12:4312:43, 14 August 2010 diff hist +93‎ Phenix ‎No edit summary
12:3012:30, 14 August 2010 diff hist +943‎ Phenix ‎No edit summary

11:1711:17, 12 August 2010 diff hist +356‎ Phenix ‎No edit summary
10:2510:25, 12 August 2010 diff hist +586‎ Phenix ‎ →‎See also

15:1615:16, 9 August 2010 diff hist +200‎ Phenix ‎No edit summary

22:3122:31, 6 August 2010 diff hist +757‎ Phenix ‎ phenix.model_vs_data

19:5619:56, 4 August 2010 diff hist +217‎ Phenix ‎ more tools

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